Plant Circular RNA Database

Detail information of Os06g0298400_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os06g0298400_circ_g.5
					
						ID in PlantcircBase
						osa_circ_030597
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 11087240-11093394  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0298400						
					
						Parent gene annotation
						
							WW/Rsp5/WWP domain containing protein. (Os06t0298400-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0298400_circ_g.1 Os06g0298400_circ_g.2 Os06g0298400_circ_g.3 Os06g0298400_circ_g.4 Os06g0298400_circ_g.6 Os06g0298400_circ_g.7 Os06g0298400_circ_g.8 Os06g0298400_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0298400-01:8

General Information
CircRNA Name	Os06g0298400_circ_g.5
ID in PlantcircBase	osa_circ_030597
Alias	NA
Organism	Oryza sativa
Position	chr6: 11087240-11093394 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0298400
Parent gene annotation	WW/Rsp5/WWP domain containing protein. (Os06t0298400-01)
Parent gene strand	+
Alternative splicing	Os06g0298400_circ_g.1 Os06g0298400_circ_g.2 Os06g0298400_circ_g.3 Os06g0298400_circ_g.4 Os06g0298400_circ_g.6 Os06g0298400_circ_g.7 Os06g0298400_circ_g.8 Os06g0298400_circ_g.9
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0298400-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AAATAGCGAGACTATTTCTGCACCAGTGAGTGTCACCGATCTGCATAAAGGACAACCTGATCTT
GCAGAGCTCTGCAAGGGTCTTCCTTCTGGATGGCAGggggaacaccttcgaaagagggagagcg
aggggaaaaccatgaccaacaaactggggttcccacttcaccatcttcttcaggtgggtttcat
cagtttcc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	AAATAGCGAGACTATTTCTGCACCAGTGAGTGTCACCGATCTGCATAAAGGACAACCTGATCTT GCAGAGCTCTGCAAGGGTCTTCCTTCTGGATGGCAGggggaacaccttcgaaagagggagagcg aggggaaaaccatgaccaacaaactggggttcccacttcaccatcttcttcaggtgggtttcat cagtttcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.11132861

Conservation Information
Conserved circRNAs	NA
PMCS	0.11132861

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							11093389-11087827(+)
11088726-11087827(+)
11087282-11091211(-)
11087313-11091062(-)
						
					

						Potential amino acid sequence
						
							MAGGTPSKEGERGENHDQQTGVPTSPSSSDKKENPLALLGQYSDDEEEEEAADQPNDETEANPA
DAGDKITHERGDLTRNEGDAQSDLAGSANVQQELTEADDKKCTGNIAEENVVAIKPTLEDGTAT
ATEAIPDSSGMQIVGDIGGNWKTIMHEQSNQCYYWNTVTGETSWEIPNVLASEIAADSVTSASA
PTHVDYSMEAQAHALTHNAVEAYPSDISVLNGSVAYATLGMGQPTHDAYAYAGAVTSHESMDID
PLQLARYGEELLQRLKPLERLHGSIYNVELLKREIEIRISDCNALSSYGSSLLPLWLHAEVHLK
QLEFSVSKLETSYSTTEPRHPEKADTEHKTPNEAEVMMPPSNGEGLKSEVSTDVMMDGNVKNEE
PFSTSSIQKSEENDTTTVPSKIESDNDEDMDVDMEVDDDNVEEHKHSNSTPIKEYPPSEQVQSP
ALLLLDGSAAPLEDSDIPPPPPEDEWIPPPPPENEPAPPPPPEEPAVSSVSTETIPQSYVDQAN
LVYTVPGMEYYAAAGTEGTHASYYMQTSEPHVVQAHQNGYYAPVSASGISIPVDATSIAPVPVS
YYSYPSVTMAATGEAAEPSGYYAASVSATSSSVLDNTTSSSNLAPANSSLHSRESDNIISKEAK
LASLSQPVGATSASASIQGSSAQASTSTTSQSKVVRSKKRAVSVATSLRSNKKVSSLVDKWKAA
KEELRDEEDEEPESALDALERKRQKDIDEWRKQQIASGEAQENANFVPLGGDWRDRVKRRRAEA
KKEANSETISAPVSVTDLHKGQPDLAELCKGLPSGWQGEHLRKRESEGKTMTNKLGFPLHHLLQ
IRRRIL*(+)
MQIVGDIGGNWKTIMHEQSNQCYYWNTVTGETSWEIPNVLASEIAADSVTSASAPTHVDYSMEA
QAHALTHNAVEAYPSDISVLNGSVAYATLGMGQPTHDAYAYAGAVTSHESMDIDPLQLARYGEE
LLQRLKPLERLHGSIYNVELLKREIEIRISDCNALSSYGSSLLPLWLHAEVHLKQLEFSVSKLE
TSYSTTEPRHPEKADTEHKTPNEAEVMMPPSNGEGLKSEVSTDVMMDGNVKNEEPFSTSSIQKS
EENDTTTVPSKIESDNDEDMDVDMEVDDDNVEEHKHSNSTPIKEYPPSEQVQSPALLLLDGSAA
PLEDSDIPPPPPEDEWIPPPPPENEPAPPPPPEEPAVSSVSTETIPQSYVDQANLVYTVPGMEY
YAAAGTEGTHASYYMQTSEPHVVQAHQNGYYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMA
ATGEAAEPSGYYAASVSATSSSVLDNTTSSSNLAPANSSLHSRESDNIISKEAKLASLSQPVGA
TSASASIQGSSAQASTSTTSQSKVVRSKKRAVSVATSLRSNKKVSSLVDKWKAAKEELRDEEDE
EPESALDALERKRQKDIDEWRKQQIASGEAQENANFVPLGGDWRDRVKRRRAEAKKEANSETIS
APVSVTDLHKGQPDLAELCKGLPSGWQGEHLRKRESEGKTMTNKLGFPLHHLLQIRRRIL*(+)
MVFPSLSLFRRCSPCHPEGRPLQSSARSGCPLCRSVTLTGAEIVSLFASFFASALLRFTRSRQS
PPRGTKLAFS*(-)
MVKWEPQFVGHGFPLALPLSKVFPLPSRRKTLAELCKIRLSFMQIGDTHWCRNSLAICLLFCFR
SPAFHTITPVTTKGNKIGIFLSFSAGYLLLAPLINILLTLSF*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	11093389-11087827(+) 11088726-11087827(+) 11087282-11091211(-) 11087313-11091062(-)
Potential amino acid sequence	MAGGTPSKEGERGENHDQQTGVPTSPSSSDKKENPLALLGQYSDDEEEEEAADQPNDETEANPA DAGDKITHERGDLTRNEGDAQSDLAGSANVQQELTEADDKKCTGNIAEENVVAIKPTLEDGTAT ATEAIPDSSGMQIVGDIGGNWKTIMHEQSNQCYYWNTVTGETSWEIPNVLASEIAADSVTSASA PTHVDYSMEAQAHALTHNAVEAYPSDISVLNGSVAYATLGMGQPTHDAYAYAGAVTSHESMDID PLQLARYGEELLQRLKPLERLHGSIYNVELLKREIEIRISDCNALSSYGSSLLPLWLHAEVHLK QLEFSVSKLETSYSTTEPRHPEKADTEHKTPNEAEVMMPPSNGEGLKSEVSTDVMMDGNVKNEE PFSTSSIQKSEENDTTTVPSKIESDNDEDMDVDMEVDDDNVEEHKHSNSTPIKEYPPSEQVQSP ALLLLDGSAAPLEDSDIPPPPPEDEWIPPPPPENEPAPPPPPEEPAVSSVSTETIPQSYVDQAN LVYTVPGMEYYAAAGTEGTHASYYMQTSEPHVVQAHQNGYYAPVSASGISIPVDATSIAPVPVS YYSYPSVTMAATGEAAEPSGYYAASVSATSSSVLDNTTSSSNLAPANSSLHSRESDNIISKEAK LASLSQPVGATSASASIQGSSAQASTSTTSQSKVVRSKKRAVSVATSLRSNKKVSSLVDKWKAA KEELRDEEDEEPESALDALERKRQKDIDEWRKQQIASGEAQENANFVPLGGDWRDRVKRRRAEA KKEANSETISAPVSVTDLHKGQPDLAELCKGLPSGWQGEHLRKRESEGKTMTNKLGFPLHHLLQ IRRRIL(+) MQIVGDIGGNWKTIMHEQSNQCYYWNTVTGETSWEIPNVLASEIAADSVTSASAPTHVDYSMEA QAHALTHNAVEAYPSDISVLNGSVAYATLGMGQPTHDAYAYAGAVTSHESMDIDPLQLARYGEE LLQRLKPLERLHGSIYNVELLKREIEIRISDCNALSSYGSSLLPLWLHAEVHLKQLEFSVSKLE TSYSTTEPRHPEKADTEHKTPNEAEVMMPPSNGEGLKSEVSTDVMMDGNVKNEEPFSTSSIQKS EENDTTTVPSKIESDNDEDMDVDMEVDDDNVEEHKHSNSTPIKEYPPSEQVQSPALLLLDGSAA PLEDSDIPPPPPEDEWIPPPPPENEPAPPPPPEEPAVSSVSTETIPQSYVDQANLVYTVPGMEY YAAAGTEGTHASYYMQTSEPHVVQAHQNGYYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMA ATGEAAEPSGYYAASVSATSSSVLDNTTSSSNLAPANSSLHSRESDNIISKEAKLASLSQPVGA TSASASIQGSSAQASTSTTSQSKVVRSKKRAVSVATSLRSNKKVSSLVDKWKAAKEELRDEEDE EPESALDALERKRQKDIDEWRKQQIASGEAQENANFVPLGGDWRDRVKRRRAEAKKEANSETIS APVSVTDLHKGQPDLAELCKGLPSGWQGEHLRKRESEGKTMTNKLGFPLHHLLQIRRRIL(+) MVFPSLSLFRRCSPCHPEGRPLQSSARSGCPLCRSVTLTGAEIVSLFASFFASALLRFTRSRQS PPRGTKLAFS(-) MVKWEPQFVGHGFPLALPLSKVFPLPSRRKTLAELCKIRLSFMQIGDTHWCRNSLAICLLFCFR SPAFHTITPVTTKGNKIGIFLSFSAGYLLLAPLINILLTLSF(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0298400_circ_g.5

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