Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045447_circ_g.2 |
ID in PlantcircBase | zma_circ_009875 |
Alias | zma_circ_0003168, GRMZM2G092568_C1 |
Organism | Zea mays |
Position | chr9: 22475904-22476322 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d045447 |
Parent gene annotation |
RNA 2'-phosphotransferase Tpt1 / KptA family |
Parent gene strand | + |
Alternative splicing | Zm00001d045447_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045447_T001:2 Zm00001d045447_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.183065723 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22475947-22476319(+) 22476197-22476300(-) |
Potential amino acid sequence |
MNPSSSSSSSGGYHSRAAAFASPQPRGGGGRRRGGGRGQDGSDRIDALGRLLTRVLRHMAAELR LDMRTDGYVRVRDLLKLNLQTFAKVPLKSHTVDEIREVRHLPAPTSHLRFTMNPSSSSSSSGGY HSRAAAFASPQPRGGGGRRRGGGRGQDGSDRIDALGRLLTRVLRHMAAELRLDMRTDGYVRVRD LLKLNLQTFAKVPLKSHTVDEIREVRHLPAPTSHLRFTMNPSSSSSSSGGYHSRAAAFASPQPR GGGGRRRGGGRGQDGSDRIDALGRLLTRVLRHMAAELRLDMRTDGYVRVRDLLKLNLQTFAKVP LKSHTVDEIREVRHLPAPTSHLRFTMNPSSSSSSSGGYHSRAAAFASPQPRGGGGRRRGGGRGQ DGSDRIDALGRLLTRVLRHMAAELRLDMRTDGYVRVRDLLKLNLQTFAKVPLKSHTVDEIRE(+ ) MWRNTLVSRRPRASMRSLPSWPRPPPRRLPPPPRGCGEAKAAALEWYPPEEEEDDEGFMVNRRC EVGAGRWRTSLISSTV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |