Plant Circular RNA Database

Detail information of Os03g0807100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0807100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_022361
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 33732392-33733137  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0807150						
					
						Parent gene annotation
						
							Hypothetical protein. (Os03t0807150-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0807100-01:3
Os03t0807150-00:3
Os03t0807100-01:3

General Information
CircRNA Name	Os03g0807100_circ_g.2
ID in PlantcircBase	osa_circ_022361
Alias	NA
Organism	Oryza sativa
Position	chr3: 33732392-33733137 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0807150
Parent gene annotation	Hypothetical protein. (Os03t0807150-00)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0807100-01:3 Os03t0807150-00:3 Os03t0807100-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GCCCAAGATCGAGCAGCCCAACGAGTTCAGCTTGTCCCAGCTCTGGATCTTGGGTGGCTCCTTC
GGCGAGGACCTCAACAGCATCGAGGCTGGATGGCAGagcccagatggggacatcatagattgcg
tgcacatctcacaccagccagctttcgatcatcccttcctcaagaaccacaccatccaggtaaa
ccttcagc

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 498
Transcript exons: 33732392-33732478,33732569-33732814,33732973-33733137
AGCCCAGATGGGGACATCATAGATTGCGTGCACATCTCACACCAGCCAGCTTTCGATCATCCCT
TCCTCAAGAACCACACCATCCAGATGAGGCCGAACTACCATCCCGATGGCCTGTACGACGAATC
CAAGAGCGGCGGCGGCGGCGAGAAGCCCATGGTCCAGCTCTGGCACCAGGGCGGCAGGTGCCCG
GAGGACACCGTCCCAATCCGGCGTACGAAGCGGGACGACCTGCTCCGGGCGAGCTCCATGCGCC
GCTACGGCAAGAAGCGGCACCCGGCGCCCAACCCCATGTCCGTCGACCCCAACCTGCTCAACGA
GGGCGGCCACCAGCATGCCATCGCGTACGTCCAGGGCGACAAGTACTACGGCGCCAAGGCAACC
ATCAATGTCTGGGCGCCCAAGATCGAGCAGCCCAACGAGTTCAGCTTGTCCCAGCTCTGGATCT
TGGGTGGCTCCTTCGGCGAGGACCTCAACAGCATCGAGGCTGGATGGCAG
						
						Genomic sequence
						
							AGCCCAGATGGGGACATCATAGATTGCGTGCACATCTCACACCAGCCAGCTTTCGATCATCCCT
TCCTCAAGAACCACACCATCCAGGTAAACCTTCAGCTGCAACAATGGCATCTACAAACCTCAAT
TCGTTGGATTCCGCAACAATGGCGGTGACCATCATCATGCTCTCCGCAGATGAGGCCGAACTAC
CATCCCGATGGCCTGTACGACGAATCCAAGAGCGGCGGCGGCGGCGAGAAGCCCATGGTCCAGC
TCTGGCACCAGGGCGGCAGGTGCCCGGAGGACACCGTCCCAATCCGGCGTACGAAGCGGGACGA
CCTGCTCCGGGCGAGCTCCATGCGCCGCTACGGCAAGAAGCGGCACCCGGCGCCCAACCCCATG
TCCGTCGACCCCAACCTGCTCAACGAGGGCGGCCACCAGGTACGTCACAATCACATATTCACCC
AGGAATGAGAGGGGGTCGCCATTGATGCGCTATGACCTCCATGCTTGCAATGTTTGTTGTTGCA
CTGCGGGTACCAGCAATGGCTCATTTACTGATTTGCCTGGGTGAAAATTTATCTTTCTTTGTTT
TGCAGCATGCCATCGCGTACGTCCAGGGCGACAAGTACTACGGCGCCAAGGCAACCATCAATGT
CTGGGCGCCCAAGATCGAGCAGCCCAACGAGTTCAGCTTGTCCCAGCTCTGGATCTTGGGTGGC
TCCTTCGGCGAGGACCTCAACAGCATCGAGGCTGGATGGCAG

Sequences
Splice junction sequence	GCCCAAGATCGAGCAGCCCAACGAGTTCAGCTTGTCCCAGCTCTGGATCTTGGGTGGCTCCTTC GGCGAGGACCTCAACAGCATCGAGGCTGGATGGCAGagcccagatggggacatcatagattgcg tgcacatctcacaccagccagctttcgatcatcccttcctcaagaaccacaccatccaggtaaa ccttcagc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 498 Transcript exons: 33732392-33732478,33732569-33732814,33732973-33733137 AGCCCAGATGGGGACATCATAGATTGCGTGCACATCTCACACCAGCCAGCTTTCGATCATCCCT TCCTCAAGAACCACACCATCCAGATGAGGCCGAACTACCATCCCGATGGCCTGTACGACGAATC CAAGAGCGGCGGCGGCGGCGAGAAGCCCATGGTCCAGCTCTGGCACCAGGGCGGCAGGTGCCCG GAGGACACCGTCCCAATCCGGCGTACGAAGCGGGACGACCTGCTCCGGGCGAGCTCCATGCGCC GCTACGGCAAGAAGCGGCACCCGGCGCCCAACCCCATGTCCGTCGACCCCAACCTGCTCAACGA GGGCGGCCACCAGCATGCCATCGCGTACGTCCAGGGCGACAAGTACTACGGCGCCAAGGCAACC ATCAATGTCTGGGCGCCCAAGATCGAGCAGCCCAACGAGTTCAGCTTGTCCCAGCTCTGGATCT TGGGTGGCTCCTTCGGCGAGGACCTCAACAGCATCGAGGCTGGATGGCAG
Genomic sequence	AGCCCAGATGGGGACATCATAGATTGCGTGCACATCTCACACCAGCCAGCTTTCGATCATCCCT TCCTCAAGAACCACACCATCCAGGTAAACCTTCAGCTGCAACAATGGCATCTACAAACCTCAAT TCGTTGGATTCCGCAACAATGGCGGTGACCATCATCATGCTCTCCGCAGATGAGGCCGAACTAC CATCCCGATGGCCTGTACGACGAATCCAAGAGCGGCGGCGGCGGCGAGAAGCCCATGGTCCAGC TCTGGCACCAGGGCGGCAGGTGCCCGGAGGACACCGTCCCAATCCGGCGTACGAAGCGGGACGA CCTGCTCCGGGCGAGCTCCATGCGCCGCTACGGCAAGAAGCGGCACCCGGCGCCCAACCCCATG TCCGTCGACCCCAACCTGCTCAACGAGGGCGGCCACCAGGTACGTCACAATCACATATTCACCC AGGAATGAGAGGGGGTCGCCATTGATGCGCTATGACCTCCATGCTTGCAATGTTTGTTGTTGCA CTGCGGGTACCAGCAATGGCTCATTTACTGATTTGCCTGGGTGAAAATTTATCTTTCTTTGTTT TGCAGCATGCCATCGCGTACGTCCAGGGCGACAAGTACTACGGCGCCAAGGCAACCATCAATGT CTGGGCGCCCAAGATCGAGCAGCCCAACGAGTTCAGCTTGTCCCAGCTCTGGATCTTGGGTGGC TCCTTCGGCGAGGACCTCAACAGCATCGAGGCTGGATGGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.27008836

Conservation Information
Conserved circRNAs	NA
PMCS	0.27008836

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							33732570-33733134(+)
33732592-33732410(+)
33733132-33733134(+)
33732428-33733007(-)
						
					

						Potential amino acid sequence
						
							MRPNYHPDGLYDESKSGGGGEKPMVQLWHQGGRCPEDTVPIRRTKRDDLLRASSMRRYGKKRHP
APNPMSVDPNLLNEGGHQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGED
LNSIEAGWQSPDGDIIDCVHISHQPAFDHPFLKNHTIQMRPNYHPDGLYDESKSGGGGEKPMVQ
LWHQGGRCPEDTVPIRRTKRDDLLRASSMRRYGKKRHPAPNPMSVDPNLLNEGGHQHAIAYVQG
DKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQSPDGDIIDCVHISHQPA
FDHPFLKNHTIQMRPNYHPDGLYDESKSGGGGEKPMVQLWHQGGRCPEDTVPIRRTKRDDLLRA
SSMRRYGKKRHPAPNPMSVDPNLLNEGGHQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLS
QLWILGGSFGEDLNSIEAGWQSPDGDIIDCVHISHQPAFDHPFLKNHTIQMRPNYHPDGLYDES
KSGGGGEKPMVQLWHQGGRCPEDTVPIRRTKRDDLLRASSMRRYGKKRHPAPNPMSVDPNLLNE
GGHQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQ(+)
MACTTNPRAAAAARSPWSSSGTRAAGARRTPSQSGVRSGTTCSGRAPCAATARSGTRRPTPCPS
TPTCSTRAATSMPSRTSRATSTTAPRQPSMSGRPRSSSPTSSACPSSGSWVAPSARTSTASRLD
GRAQMGTS*(+)
MAEPRWGHHRLRAHLTPASFRSSLPQEPHHPDEAELPSRWPVRRIQERRRRREAHGPALAPGRQ
VPGGHRPNPAYEAGRPAPGELHAPLRQEAAPGAQPHVRRPQPAQRGRPPACHRVRPGRQVLRRQ
GNHQCLGAQDRAAQRVQLVPALDLGWLLRRGPQQHRGWMAEPRWGHHRLRAHLTPASFRSSLPQ
EPHHPDEAELPSRWPVRRIQERRRRREAHGPALAPGRQVPGGHRPNPAYEAGRPAPGELHAPLR
QEAAPGAQPHVRRPQPAQRGRPPACHRVRPGRQVLRRQGNHQCLGAQDRAAQRVQLVPALDLGW
LLRRGPQQHRGWMAEPRWGHHRLRAHLTPASFRSSLPQEPHHPDEAELPSRWPVRRIQERRRRR
EAHGPALAPGRQVPGGHRPNPAYEAGRPAPGELHAPLRQEAAPGAQPHVRRPQPAQRGRPPACH
RVRPGRQVLRRQGNHQCLGAQDRAAQRVQLVPALDLGWLLRRGPQQHRGWMA(+)
MCTQSMMSPSGLCHPASMLLRSSPKEPPKIQSWDKLNSLGCSILGAQTLMVALAP*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	33732570-33733134(+) 33732592-33732410(+) 33733132-33733134(+) 33732428-33733007(-)
Potential amino acid sequence	MRPNYHPDGLYDESKSGGGGEKPMVQLWHQGGRCPEDTVPIRRTKRDDLLRASSMRRYGKKRHP APNPMSVDPNLLNEGGHQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGED LNSIEAGWQSPDGDIIDCVHISHQPAFDHPFLKNHTIQMRPNYHPDGLYDESKSGGGGEKPMVQ LWHQGGRCPEDTVPIRRTKRDDLLRASSMRRYGKKRHPAPNPMSVDPNLLNEGGHQHAIAYVQG DKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQSPDGDIIDCVHISHQPA FDHPFLKNHTIQMRPNYHPDGLYDESKSGGGGEKPMVQLWHQGGRCPEDTVPIRRTKRDDLLRA SSMRRYGKKRHPAPNPMSVDPNLLNEGGHQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLS QLWILGGSFGEDLNSIEAGWQSPDGDIIDCVHISHQPAFDHPFLKNHTIQMRPNYHPDGLYDES KSGGGGEKPMVQLWHQGGRCPEDTVPIRRTKRDDLLRASSMRRYGKKRHPAPNPMSVDPNLLNE GGHQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQ(+) MACTTNPRAAAAARSPWSSSGTRAAGARRTPSQSGVRSGTTCSGRAPCAATARSGTRRPTPCPS TPTCSTRAATSMPSRTSRATSTTAPRQPSMSGRPRSSSPTSSACPSSGSWVAPSARTSTASRLD GRAQMGTS(+) MAEPRWGHHRLRAHLTPASFRSSLPQEPHHPDEAELPSRWPVRRIQERRRRREAHGPALAPGRQ VPGGHRPNPAYEAGRPAPGELHAPLRQEAAPGAQPHVRRPQPAQRGRPPACHRVRPGRQVLRRQ GNHQCLGAQDRAAQRVQLVPALDLGWLLRRGPQQHRGWMAEPRWGHHRLRAHLTPASFRSSLPQ EPHHPDEAELPSRWPVRRIQERRRRREAHGPALAPGRQVPGGHRPNPAYEAGRPAPGELHAPLR QEAAPGAQPHVRRPQPAQRGRPPACHRVRPGRQVLRRQGNHQCLGAQDRAAQRVQLVPALDLGW LLRRGPQQHRGWMAEPRWGHHRLRAHLTPASFRSSLPQEPHHPDEAELPSRWPVRRIQERRRRR EAHGPALAPGRQVPGGHRPNPAYEAGRPAPGELHAPLRQEAAPGAQPHVRRPQPAQRGRPPACH RVRPGRQVLRRQGNHQCLGAQDRAAQRVQLVPALDLGWLLRRGPQQHRGWMA(+) MCTQSMMSPSGLCHPASMLLRSSPKEPPKIQSWDKLNSLGCSILGAQTLMVALAP(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0807100_circ_g.2

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