Detail information of Os10g0561400_circ_g.2


General Information
CircRNA Name Os10g0561400_circ_g.2
ID in PlantcircBase osa_circ_008010
Alias Os10circ09903
Organism Oryza sativa
Position chr10: 22133464-22136186  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl
Parent gene Os10g0561400
Parent gene annotation Similar to Transcription factor MYBS3. (Os10t0561400-01);Similar
to Transcription factor MYBS3. (Os10t0561400-02);Similar to Myb
transcription factor. (Os10t0561400-03)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0561400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGGCGAAGCAGACAAGTACCTTCAGAAAGCAATTGGTACACATCATCACTCAAATCCATCTT
CCAGAGGCCCAAATCAGAAATACCGCTTGATGCATCctgcctcgtccaacgcgaataacattcg
tgcagctcaaggtgtggccgaccgtgcgcgtacctgtagtagagaaacgtacatggatttattt
tctggcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCCTCGTCCAACGCGAATAACATTCGTGCAGCTCAAGGTGTGGCCGACCGTGCGCGTACCTG
TAGTAGAGAAACGTACATGGATTTATTTTCTGGCTAGCTTCACAAGTGGTTAGCTAATTGATCT
GGATTCAAAGACTCATCTATTCTATTTATTTAATATTAAATTTTTCTCTACTATTCGCGTTTTT
TTCGTACCTGTATGTATACGGAGTACTTATATATAAGGGTAGTCTGGTACACGAATTCGTAGAC
GTTGCACACCAGCTTCCACGACAAATAAATAATCCTGCGAGCTGCAGCTGCTCATCATCAGCTC
ATCCTATCCTACGGACTGCAACAACCAACACAAACACAAGTCAGTCCATGCCGAAAGAAGCCAA
AGAAAAATGCATGGAAAATGTATACACCACATCATCTTGAACCAAATCACCAGATTAATCAAAG
CCAACGAACGTACGGCAAGGTGATCATGATAACTATAGCAAGGATGTAAAAACAGGAGTATTAT
ATTTTCAAGAACACGAGCAATCAACGGATCTGAACCTGAAGTAATTAACCTGCAAGTCAAAAGG
GATCCACCGCGAGAGGTGGATTATTGTCGGTCTACCACTCGTAAAACCGGGGGACAATGTTGTC
GGTCTACTACTGCATTCTGTATTATCATATTGCTACAAGCACGAAACAGTGACAGCTTATCTAA
GCCAACAATATGCTTTCTGCTCGCAACTAATTAAAATTGCATCCATGGGGTTGAACGGACCAAA
GAGGATAAGTTAAGAAAAAGCGTGGCTAAACACTCAAAAAGTCGGCAATCGATCAGCATGCACC
TTTATCCCTTATGCACGGTAATCCTAAGCCATGACTATCACGGAACGCGTCAAAGAAAAATGAC
AGTCACGGATCAATCAAGGGCGCAGTTAATAAAAATAGCAAAAACTTGAAGGTGTTAGGATAAT
TTTGACAGTGACTTGCTTGTTACAGAGATATTACCTTTTTTTTATATTCTGTACTAAAGAGTAT
TTACCTATTTGAAGTAGAAAGGCATCATAATCTAAAGTAAAACAGAGTATGTAAGCAACTGAGT
GAGCAATGGCCTATATTATTTTCGTGTGGAGATATTCTCATCTAATGTCATCAAGATTCAAGAC
GGAGGTTGCACTTGCACCGATCTAGAGAGAGGATGTGCTTACCAACATCCAAATCTTGATGCCT
AATTTTGTTGATGCAGTTGGACAAAATATCCCTTGCAAGATACTAGCATATATCTTCAAATTAT
CGAATAAAATATAAGTTAGGATCCATCAGCAGTGACTGGACCATATCTTTTTTTATATATAAAA
AAACTGACACTGGAGTACAGGACCATATCAACAGGTGGATATATATTGTTTACGTGAGTGATAA
TCTAAAGAAAGAACAGAACTTGATGAATTAAAAGTTGTGAAAAAGATAGCATACCTGCAGGCAA
GGGTAGCCATTCCATATTGGCATATTCCGAATGTGCCGTTGCAACAGTTTCCATCATCAGATTC
ATATGCTTCACTGGTATTGAATTGATAAACAAATCCATTTCAATAAAACAAAGAGATAAGATGT
ATGGAAATAAAAGATAAACTTAAAAAAGTTGCTCGGCTGGATCAACAATGATAAAGAAACACAG
TCAGTTCATTAAAAAGAATAAGAAGATTCATGATTTGTTTTCTGTTTATATCTCATTCTCTAGT
TTAAAAACAACTCAGTTGAACATTGCACAAAACAACGGTACTCCAGAGCCCAGAAGCCTACACG
CCTTATATTTATGTTACCTAATAGATTTAATTTTCTCAATCATACGCACCCAGTATATGGCAGC
AATATAATTAATCTGAAACATTAGTAAGAAGATTTTGCTGAGATGCTAGTCTGAACACTGAACC
AACCATATTTATGTTACCTAATAGATTTAATTTTCTCAATCATACGCACCCAGTATATGGCAGC
AATATAATTAATCTGAAACATTAGTAAGAAGATTTTGCCGAGCTGCTAGTCTGAACACTGAACC
AACCATTTTGGACCTTATGGTTTCTTACTAAACTAAAAATGTTCTGGCATGAAGAGTTTTAGTA
TCATATAAACACTGTAATGCACAGATATTTAGTACCAACTAACAAATACACTTGAAATGGTGCA
CTTATGACTGCACTGCATTATTGACCGAATAGTGCTGATCAGCAGTAACGTGCACCATTGTTCT
GAAAGAATTCAGAATCAGGTCCCAAACTTGAAGGGAAATATAAGCAACAACAGTGGAGTAAACA
GTTCTCTGAAACAAGATATGAATGTGCAATGAGCAAGAGTGATAGAAAGTGGGTTGTGAACTTG
TGATACAGTTCTAGAATGCTGTAGTTGTTTGCACAATACCAAATCAAAAATGCCTATGGCAGAT
TTGCACAGTACAGTTTCATTGACGCCTTTCAAGATGGAAAGTGTTCTAAAGATAATTTGGCCGG
ACAAATATAGAAATATTCTTTTGTCCTTTTAAGAAGCAAAGCTTGGAAAGGACATCAAATCAAC
TGAATGATGAACGTCCAAGTAAAAATGAACGGTTACATTTGACAAATTTATCAGTTGTTGAGAA
ATGGCGAAGCAGACAAGTACCTTCAGAAAGCAATTGGTACACATCATCACTCAAATCCATCTTC
CAGAGGCCCAAATCAGAAATACCGCTTGATGCATC
Conservation Information
Conserved circRNAs osi_circ_008705
PMCS 0.09175777
Functional Information
Coding potential Y
Potential coding position 22136181-22133714(+)
Potential amino acid sequence MHPASSNANNIRAAQGVADRARTCMYTEYLYIRVVWYTNS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015