Detail information of BGIOSGA018531_circ_ig.1


General Information
CircRNA Name BGIOSGA018531_circ_ig.1
ID in PlantcircBase osi_circ_016035
Alias Chr12:8295245_8316320(MH63RS2), Chr12:8298078_8316780(MH63RS2), Chr12:8299540_8327151(MH63RS2), Chr12:8303718_8316320(MH63RS2), Chr12:8305362_8316780(MH63RS2), Chr12:8295245_8316320(MH63RS2), Chr12:8298078_8316780(MH63RS2), Chr12:8299540_8327151(MH63RS2), Chr12:8303718_8316320(MH63RS2), Chr12:8305362_8316780(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 8549152-8553916  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018530_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAGTTTTTTCATTCGTGCCCGAAAACTCTTTTCGACATCTAGTCAAACATCCGATGAGAAC
CAAAAATTTTCTTTTCACGAACTAAACACATCCTTAcatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
tatatata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATAACTTCTTTTACTTTTCAAGATAGTGG
ATAGAAATCATATATCTATATTCCGAAACAACTACAAATCGAACGTCTGTTTTTTTTTTCCAAA
AATTGGACGCTATTTAACCTCTTATACAAAAATGCTTCAATAGTTAATGAAAATATGTTTCAAG
TCTTGAAAAAATAGTGAAACAAATAAGTAGATGAAACAAATGATTTTAAGCTACATCTGTAGAT
CTGAGTAAAATCGAAGAAAGAAAACATGAAACACCATCCAATACCCACTGCAACAATTTTCTCG
AACGAATGAAACATACAGATGCATGGACTGAAACACTAAAAATTCACAACACGCCCATCCACTT
TTGTGATGCTCCTCCATTGTGCGCTACTGACAGTGAAGTGACGACGTCGTCCTTGAGCACACCA
GTCTTCTGGAATGTGAGAAGAGAAGGACGGTCGTTGCCTAGTTCTGAAGCTCAACACAAAAATC
ATCACATAGCTCCGGATCAAATCATGTTCTCCAACACCGGTGACCATGCCGTCGTCGCATGTCA
CCTTCAGCGCCAGACCTCCCCCTCCCACAACTACCTTCTTCACTCGTGTGCCACAGAGATAAAT
CTAGCCATCCCCAGATCACAAGCTCCACTATGACCTTGAACTCATCCCACCGTAGCGACGTCAC
CTCAGACGCTTGCCTGTGTCCATCGTCTAGTCATGGAAGAGGGGAAGAGGAGGGAGTGAGTGGG
AGAAGAGAGGGAGACGGAGAGGGGCCTTGCCTCCCAAGCTGTCATCACTCACCATTCACGGCTA
TGGAAATTGAGATAAAAAATGAGTGGCTGAGAACTGAGGAGCTCATGATATTTCTGTTTTTGTT
GGATGCTCGAGTAGAAGCGTTTTCATCTATATTCATACAGCCAAATCAAGTTATTTTAATTAAT
TATGTGCTAATTTGTTGAGCTGATAGAAAATAAATTACCTTGATGTTCCCAGCTTGTTTGATGG
CCTCGACGAGCTTGATCTGGAGCATGAGGTTATGACTGCGGATGTGGGCGCCGGACATGGCGGA
GACGACGACGTCCACCTGCCGGATCGCGGCGACGAGGCCATCGTGGTCGTCAAGCGACGCCTCG
AGGAGCCGCGCGCCCTGCGCCTTGAAGGCCAGAAGGATCTGGAGCTTGTCGATGTCGAGGCCGA
TCTCCGGCCGGAGCAGGACGGAGGTGGGGTGGCCCGCCGCCAGGCTCGCCGCCACGATCCGCCG
GCCGATGTAGCCGGTGCCACCGACGATGAGGACCCGGCTCTTCTCCATGGCCATGGCTCTTAAT
TAGCTCTGATGAGTGCCACAAACTAACCACGCTATCGTGCACTTGACTCGACAAAAGCTTTACT
GCCGATTGTGGCCTATATATACTACGCGTGGTCCAGGGTCGGCGATTATAATTAATCACTCTGA
CTGTGGTAGAGTGGTTAGGGGGAAGGTAAAGAACAAAGCTTGAATCTTTTAGCTTGGATCGGCT
TGTTTCAGCTCCGCGTTCATATAAAAGTACTGCCCCCTAATACACGATTATAGTATATATTCCA
ACTATACACGATCAGCAATCACCCTATTCATCTAGTGTCAAGTTACAATCACACAAGTAGGAGT
GAAAACGGGATAGGTATTTTCCACCCACACGTCTCGACCATATTAATTCGGGACAAAAAATTCA
GATACCTAGGGGTGTATGTGTATAGGTAAATTAACTGGTACTACATAGAGTATAGGCTCCAAGA
TTTAAATTGAGTATATACCCAATTTTAATGTTTATTTGTTTATATATATATATAAGTAGGCAAT
CTCACTCACTATCCTTCCAAAAATTTATCTGCAAGTTTTGTGCTCTTTGTTGTTGGTCATAATA
ATGTTTGCCGCTGTTTAGTTTTAGTAATGTGACCAGTTTAATGCACCAAAGCTGGTGCTTCGAT
GTAGGCGTACTGTCCCATAATTTGTTCGTAGAAGTTGGAGATTCTACAATGGTGCAGTTCAATA
ATTAGCCAGTCATCTCACAAATCTGTACAAGTTAAAAAGGCCACTATGGCTGTGTTTAAATATA
GGGGTGAAAAATTTTAACGTGTCACATTGCACGTACGGACACACATTTAATATATTAAATGTAG
ACTAATAATAAAACAAATTACAGATTCCACCAATAAACTGCGAGATAAATTTATTAAGCCTAAT
TAATCCGTCATTAGCAAATCTTTACTGTAGCACCACATTATCAAATTATAGAGCAATTAGGCTT
AAAAGATTTATCTCGCAATTTACACGCAATCCGTGTAATTAGGTTTTTATTTTTATCTATATTT
AATACTCGATGCATGTGTCCAAATATTCGATGTGACATGATGAAAAATTTTTGCGTGGGAACTA
AACAGGGCCTATATTTTCAGATCCTACATCCAATGAGTTTTGCCACATACAAGTAATTAGGCCC
GGTGTAGTTCCCACACAAAAATTTTACACCCCATCACATCGAACGTTTAAATGCCTGCATGAAG
TATTAAATATGGACAAAAAAAACTAATTGCACAGATTGCGACTAATTTGCGAGACGAATCTTTT
AATCCTAAATGCTCTATGATTTGACAATGTGGTGCTACAGTAAATATTTGCTAAATATGGATTA
ATTAGGCTTAATAAATTCGTCTCGCTGTTTACTAACAGATACTGTAATTAGTTTATTAATTAAT
GCCCAAACACCCCATGTGACAGCCTATATAATACCCGATATAACATGTCAAAACTTTACACCCC
TAGGTATAAACACTCCCTTAAAAAGTTTGGACTGGGCGCTATATTTTCAGATCCTACACCGTAC
CCCAAGAATCTACTTATTCTGCCCGAAATACAAGATATTTTAGATAGATGGAACATTTCCTACA
GTAACATGAATCTGCATAGGGAGCTTGTCCAGATACATATTATTAGGAAATATCACACTCATCT
AAAATCTCTTAATTTTTTTAGAACGGAGGTAGTAAAATATAGTTGTAACCACCAGGAGCTTTAA
CACAATACCATTGTTTAATTTTGGAGTACTCCCTCTTTCCAAAAATCTCAGACCTATTTCATTC
TTTGGTTTCTCCAATAATCTAAGTCTTATTTATAGTTACTATGTGCTAAATTAAATGGTTGGTC
AGAAACGAGAAGCTATTCTAGTATTTATTGGTTGCATGTTTATTGATTTTATCACATGGTGAGT
GATTTAATTGCTTCTTGGTTTTAATGAAAAAGAAATAGGTTTCAAATTTTTGCAAGGAGGGAGT
ACTGACTAGGAGACAGCGATATCCTGTCAACTCCCTACCTACTACACCTACTCCAAAATGGCGA
CGGGTCCTTGAATTGTTTTTCTGCATGCTGCTTAGTAATACCATTTACTCGCTCCGTCCTATTT
TAAATACAACCATAAATTTTTATGTCTAACATCATCTATCTTACTTAAATTTTTTATGATTAAT
ATTTTTATTGTTATTAGATGATAAAATATGAATAATCCTTATGCGTGACTTATTTTTAATTTTT
TTATAATTTTTTTAAATAAAACAGAAGGTCAAATATTTAACACGGAAACTCATAGCTATACTTA
AAATGTGACGGGGGAGTACATCCAAGATTTTAAAAACTTAGGTTGAGTTTAGATATAGGGGTGA
AAAGTTTTGTTGTGTCACATCGGATATACGGATATACATTTGAAGTATAAAACGTAGTCTAATA
ACAAAAACAAATTATAAATTCTGCCTGTAAACTATGAGACGAATTTATTAAGCCTAATTAATCC
GTCATTAGCAAATATTTACTATAGCACCCCATTATCAAATCATGGAGTAATTAGGCTTAAAAGA
TTCATCTCGCAATTTACACGCAATCTGTGTAATTAGTTTTTTTTTATATTTAATACTTCATGTA
TGTGTCCAAATATTCGATGTGATAGGGTGAAAAGTTTTGCCAGGGGATCTAAACATGCCCTTAG
TTTTAATTTAACTGTTGATTTTGATTATTTATCGTAGTTCAATTTCTAGATTGGCTTATGTTTT
TTCAAACAATTACATTGCCTTTTAAATCACTTATGAATACAATAGATATAAACGTTTTATGCAT
AAATTATTCTTATTAATTAATTCACTTTTCTACCGGTTACTAGCCATAGATAAAAACTACTCCA
CCTCATTACCAGAATCCCCATTTGCCTCAACGACGGCCCCTGGTGATTAGAGACCCTGTCATAG
CTCCTACGGCAGAGGGGCACATCAACGGGTAGTAGCTCAAGATATCCACCATTTATTTTGTAAA
TCAATGATTTAGGTCTGGTTTAGTTTCCAAAATTTTTTTTACCAAAAACATCACGTCGAATTTT
TAGACACATGCATGGAGCATTAAACATAGATTAAAACAAAAACTAACTGCACAGTTTACATGGA
AATCACGAGACGAATCTTTACAGCATAATTAGTCCATGATTAGCCACAGTAACCCACATGTGCT
AATGATGGCTTAATTACGCTCGAAATATTCGTCTCGTAGTTTCCAAGCGAGTTATGAAATTAGT
TTTTTCATTCGTGCCCGAAAACTCTTTTCGACATCTAGTCAAACATCCGATGAGAACCAAAAAT
TTTCTTTTCACGAACTAAACACATCCTTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021