Detail information of BGIOSGA014534_circ_g.1


General Information
CircRNA Name BGIOSGA014534_circ_g.1
ID in PlantcircBase osi_circ_014667
Alias Chr04:29064453_29064759(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27261941-27262247  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA014534
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014534_circ_g.2 BGIOSGA014534_circ_g.3 BGIOSGA014534_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA014534-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCGTTGTGATTATTAGCAAACAACCTTGTGTGATGCCGCTTCTGGACCACCACAAAGGTAAC
TGGAGGCTGATAGTTGGGTTCCAGGGATGCACAAGCcctgtatgccagcatggctacacaggta
gaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcctagaaattaggcaaaa
agaaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTATGCCAGCATGGCTACACAGGTAGAAATCAAACTCGGTTGGATGGCAAATCTTTGAGTC
AACAACAGTTCCTAGAAATTAGGCAAAAAGAAAAACAGGTACAATAAATGTCAGTCAGAATAGA
TCACCTAAGCCCAAAGTAAAATGAATGTGCATCAACAACTAACCAGGCAGAATGTTTCCACTTC
TATCAACAGTACGCTGGTCGTTGTGATTATTAGCAAACAACCTTGTGTGATGCCGCTTCTGGAC
CACCACAAAGGTAACTGGAGGCTGATAGTTGGGTTCCAGGGATGCACAAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021