Detail information of GLYMA_06G106900_circ_g.1


General Information
CircRNA Name GLYMA_06G106900_circ_g.1
ID in PlantcircBase gma_circ_008297
Alias circRNA4280
Organism Glycine max
Position chr6: 8597105-8602471  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method CIRI, CIRCexplorer
Parent gene GLYMA_06G106900
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues pod
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered KRH53132:1
KRH53133:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAGTCAGCATAATCTTCATTTACCCCTGATTCTTCTTCAAGTGAAGAAATGCGGGGGAGATC
TTTAGATTCTCTTTTCAATTTCACTCTTGAATGAACctcggattgcatattgatgcttgcactc
tctggctcatgactgcaagcagcacaagtagaattttcttgaggattaaatgaagagaatgcac
cattgccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.049247815
Functional Information
Coding potential Y
Potential coding position 8602467-8597182(+)
8602098-8597107(-)
8597210-8602458(-)
Potential amino acid sequence MNLGLHIDACTLWLMTASSTSRIFLRIK*(+)
MGNLEAVKSSIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFR
DEFEQLKSSNLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRF
LNLELEALAEILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHY
LTIPGPVSHESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQR
QMMAELQNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEA
ALKRARLNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSE
GHTSNRLLCRNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKA
LQETLLEASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDI
ALQNQILEANLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKN
NLHDELSILQEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACL
DSECEDLEGLLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDL
QEMLHKITVSGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQ
DLAQEIIKLDTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNE
LHAEKTAREKLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLH
NELHAVKTVRENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDS
LHNELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSL
HSLHNELYAEKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEK
SLHSLHNELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFL
EKSLHSLHNELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKS
RISDLLEKSEKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHS
TCRQLDVLHKKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSEL
KSELKEHKSRKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKL
DELESAFTSLKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHD
RRGHEGPPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEA
SQIKINEELGMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVK
CNEEKSKIEVELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSE
VHSRVKLKRESKDLPRISSLEEESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLK
SAVSCDLGGLSLSQSSQPEKGEAPDNQFPAQGSDRVHGWSIDYSAANNLAAASEDRNSSRLMGN
LEAVKSSIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEF
EQLKSSNLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRFLNL
ELEALAEILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHYLTI
PGPVSHESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMM
AELQNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEAALK
RARLNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSEGHT
SNRLLCRNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKALQE
TLLEASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDIALQ
NQILEANLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKNNLH
DELSILQEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACLDSE
CEDLEGLLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDLQEM
LHKITVSGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQDLA
QEIIKLDTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNELHA
EKTAREKLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLHNEL
HAVKTVRENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDSLHN
ELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSLHSL
HNELYAEKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLH
SLHNELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKS
LHSLHNELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKSRIS
DLLEKSEKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHSTCR
QLDVLHKKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSELKSE
LKEHKSRKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKLDEL
ESAFTSLKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHDRRG
HEGPPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQI
KINEELGMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVKCNE
EKSKIEVELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSEVHS
RVKLKRESKDLPRISSLEEESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLKSAV
SCDLGGLSLSQSSQPEKGEAPDNQFPAQGSDRVHGWSIDYSAANNLAAASEDRNSSRLMGNLEA
VKSSIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEFEQL
KSSNLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRFLNLELE
ALAEILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHYLTIPGP
VSHESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMMAEL
QNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEAALKRAR
LNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSEGHTSNR
LLCRNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKALQETLL
EASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDIALQNQI
LEANLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKNNLHDEL
SILQEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACLDSECED
LEGLLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDLQEMLHK
ITVSGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQDLAQEI
IKLDTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNELHAEKT
AREKLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLHNELHAV
KTVRENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDSLHNELH
AEKTVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSLHSLHNE
LYAEKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHSLH
NELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHS
LHNELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKSRISDLL
EKSEKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHSTCRQLD
VLHKKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSELKSELKE
HKSRKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKLDELESA
FTSLKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHDRRGHEG
PPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQIKIN
EELGMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVKCNEEKS
KIEVELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSEVHSRVK
LKRESKDLPRISSLEEESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLKSAVSCD
LGGLSLSQSSQPEKGEAPDNQFPAQGSDRVHGWSIDYSAANNLAAASEDRNSSRLMGNLEAVKS
SIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEFEQLKSS
NLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRFLNLELEALA
EILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHYLTIPGPVSH
ESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMMAELQNL
RNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEAALKRARLNY
SIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSEGHTSNRLLC
RNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKALQETLLEAS
LDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDIALQNQILEA
NLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKNNLHDELSIL
QEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACLDSECEDLEG
LLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDLQEMLHKITV
SGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQDLAQEIIKL
DTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNELHAEKTARE
KLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLHNELHAVKTV
RENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDSLHNELHAEK
TVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSLHSLHNELYA
EKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHSLHNEL
HAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHSLHN
ELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKSRISDLLEKS
EKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHSTCRQLDVLH
KKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSELKSELKEHKS
RKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKLDELESAFTS
LKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHDRRGHEGPPV
AMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQIKINEEL
GMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVKCNEEKSKIE
VELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSE(-)
MRAMVHSLHLILKKILLVLLAVMSQRVQASICNPRFIQE*(-)
Sponge-miRNAs gma-miR172a gma-miR172f
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a