Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | GLYMA_06G106900_circ_g.1 |
| ID in PlantcircBase | gma_circ_008297 |
| Alias | circRNA4280 |
| Organism | Glycine max |
| Position | chr6: 8597105-8602471 JBrowse» |
| Reference genome | v2.0.38 |
| Type | e-circRNA |
| Identification method | CIRI, CIRCexplorer |
| Parent gene | GLYMA_06G106900 |
| Parent gene annotation |
hypothetical protein |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | pod |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | KRH53132:1 KRH53133:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.049247815 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
8602467-8597182(+) 8602098-8597107(-) 8597210-8602458(-) |
| Potential amino acid sequence |
MNLGLHIDACTLWLMTASSTSRIFLRIK*(+) MGNLEAVKSSIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFR DEFEQLKSSNLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRF LNLELEALAEILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHY LTIPGPVSHESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQR QMMAELQNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEA ALKRARLNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSE GHTSNRLLCRNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKA LQETLLEASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDI ALQNQILEANLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKN NLHDELSILQEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACL DSECEDLEGLLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDL QEMLHKITVSGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQ DLAQEIIKLDTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNE LHAEKTAREKLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLH NELHAVKTVRENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDS LHNELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSL HSLHNELYAEKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEK SLHSLHNELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFL EKSLHSLHNELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKS RISDLLEKSEKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHS TCRQLDVLHKKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSEL KSELKEHKSRKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKL DELESAFTSLKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHD RRGHEGPPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEA SQIKINEELGMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVK CNEEKSKIEVELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSE VHSRVKLKRESKDLPRISSLEEESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLK SAVSCDLGGLSLSQSSQPEKGEAPDNQFPAQGSDRVHGWSIDYSAANNLAAASEDRNSSRLMGN LEAVKSSIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEF EQLKSSNLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRFLNL ELEALAEILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHYLTI PGPVSHESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMM AELQNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEAALK RARLNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSEGHT SNRLLCRNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKALQE TLLEASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDIALQ NQILEANLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKNNLH DELSILQEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACLDSE CEDLEGLLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDLQEM LHKITVSGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQDLA QEIIKLDTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNELHA EKTAREKLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLHNEL HAVKTVRENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDSLHN ELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSLHSL HNELYAEKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLH SLHNELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKS LHSLHNELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKSRIS DLLEKSEKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHSTCR QLDVLHKKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSELKSE LKEHKSRKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKLDEL ESAFTSLKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHDRRG HEGPPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQI KINEELGMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVKCNE EKSKIEVELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSEVHS RVKLKRESKDLPRISSLEEESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLKSAV SCDLGGLSLSQSSQPEKGEAPDNQFPAQGSDRVHGWSIDYSAANNLAAASEDRNSSRLMGNLEA VKSSIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEFEQL KSSNLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRFLNLELE ALAEILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHYLTIPGP VSHESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMMAEL QNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEAALKRAR LNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSEGHTSNR LLCRNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKALQETLL EASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDIALQNQI LEANLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKNNLHDEL SILQEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACLDSECED LEGLLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDLQEMLHK ITVSGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQDLAQEI IKLDTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNELHAEKT AREKLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLHNELHAV KTVRENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDSLHNELH AEKTVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSLHSLHNE LYAEKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHSLH NELHAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHS LHNELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKSRISDLL EKSEKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHSTCRQLD VLHKKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSELKSELKE HKSRKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKLDELESA FTSLKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHDRRGHEG PPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQIKIN EELGMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVKCNEEKS KIEVELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSEVHSRVK LKRESKDLPRISSLEEESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLKSAVSCD LGGLSLSQSSQPEKGEAPDNQFPAQGSDRVHGWSIDYSAANNLAAASEDRNSSRLMGNLEAVKS SIFDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEFEQLKSS NLSLAFPQKEPTGTDPDRLFQNLQLKWLKGLLLMEGKIRDIQKVSMGFPERDCRFLNLELEALA EILQNLKQESGEPISGAKVVNERENKKMDLHKSEQFLTDIGSDAGLFQPESMTHYLTIPGPVSH ESDSVDPTLPMKEKVFALLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMMAELQNL RNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDKRILESLNSEFERRAVSAEAALKRARLNY SIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNTDGSPEPVTYPKLSEGHTSNRLLC RNHSSSLQKQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFANIYSDVFSKALQETLLEAS LDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTANSNDIALQNQILEA NLKDLAHENNLLTEKINELEVLLTQYRSYEGKYMACSTENSELKSLLKKESLEKNNLHDELSIL QEELKSIRAKYDEQVSMKDNLQNNVIFLSNKLQKLLTSYEERHSELSLCSRSACLDSECEDLEG LLLQLEELQQSAFRRILLLIEEKENLVHEKLMAQVSLNTTESDVLVMKQKFEHDLQEMLHKITV SGALLQKLQLDFEVIISRINAGFEAEEFFSQHHKEFLSGLDHLEAELQQLNSRNQDLAQEIIKL DTSSSDLEMYKLTLATIKEQKNDLDLSLREKTEESAKISSELDFLKKNLDSLHNELHAEKTARE KLEKTVSNLTTELNEKQSQLQEKKDLKSSLQEKTEESAKISSELDFLKKNLDSLHNELHAVKTV RENLEKTVSNLTTELNEKQSQLQGKKDLESSLQEKTEESTKISSELDFLKKNLDSLHNELHAEK TVREKLEKTVSDLTTELNEKQSQLQGKKDLESSLHEKAEEAAKISSELDFLKKSLHSLHNELYA EKNVREKLEKTISDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHSLHNEL HAEKTVREKLEKTVSDLTTELNEKQSQLQGKKELELSLEEKAEESAKISSELNFLEKSLHSLHN ELHAEKTVREKLEKTVSDLTTELNEKQCQLQDSDLNRQELVHLKQMVTDLEFEKSRISDLLEKS EKHLTDALKESSSISCLETRLSEMHEFSIATDVVMTFTGAQFEDHMEELAEKLHSTCRQLDVLH KKNLDVESELDGCLSRERICIEENTRLLASLDFLKYELEDLTAQNRALIDQNSELKSELKEHKS RKEKVSDTSYVCERQSVLEVARLEQLLASCCRDAEELFLSKEETELECIVLRGKLDELESAFTS LKQSDDELLRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECVNAHDRRGHEGPPV AMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQIKINEEL GMKILELEAELQAVLSDKRNLLNAYDLLQAEKECSAISLDCCKQEKQELEASLVKCNEEKSKIE VELTLAKELVETSRSHVNSLNEGNGAFSSFNPQENSTCAACSHEPESASINMQSE(-) MRAMVHSLHLILKKILLVLLAVMSQRVQASICNPRFIQE*(-) |
| Sponge-miRNAs | gma-miR172a gma-miR172f |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021a |