Plant Circular RNA Database

Detail information of AT5G34850_circ_g.7

			
						 General Information
					
						CircRNA Name
						AT5G34850_circ_g.7
					
						ID in PlantcircBase
						ath_circ_040986
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 13109814-13111249  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT5G34850						
					
						Parent gene annotation
						
							Purple acid phosphatase
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G34850_circ_g.1 AT5G34850_circ_g.2 AT5G34850_circ_g.3 AT5G34850_circ_g.4 AT5G34850_circ_g.5 AT5G34850_circ_g.6 AT5G34850_circ_g.8 AT5G34850_circ_g.9 AT5G34850_circ_g.10 AT5G34850_circ_g.11 AT5G34850_circ_g.12 						
					
						Support reads
						215
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G34850.1:4

General Information
CircRNA Name	AT5G34850_circ_g.7
ID in PlantcircBase	ath_circ_040986
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 13109814-13111249 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT5G34850
Parent gene annotation	Purple acid phosphatase
Parent gene strand	-
Alternative splicing	AT5G34850_circ_g.1 AT5G34850_circ_g.2 AT5G34850_circ_g.3 AT5G34850_circ_g.4 AT5G34850_circ_g.5 AT5G34850_circ_g.6 AT5G34850_circ_g.8 AT5G34850_circ_g.9 AT5G34850_circ_g.10 AT5G34850_circ_g.11 AT5G34850_circ_g.12
Support reads	215
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G34850.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCAGATTCTCCTCTATATAACAACAATACTGAGCTCAAGAACACAGAGATTATCACCAAATGAT
TCATCACGTCACCAAATCTCGACTCAGTTTTTTTACcaaaaggcgaatagctggagaggacaat
gatatgagcagatgcacgcctaacagcgtaccaaagaggactgctactttttgaggctaagtaa
ggcgtagt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 879
Transcript exons: 13109814-13109952,13110300-13110526,13110665-13110776,13
110849-13111249
CAAAAGGCGAATAGCTGGAGAGGACAATGATATGAGCAGATGCACGCCTAACAGCGTACCAAAG
AGGACTGCTACTTTTTGAGGCTAAGTAAGGCGTAGTGTAACGCTGAAGGTAATTCCTGAAAGGT
GTCACCTCCCCCATGTATGGCATGTAATCTACTTCATGATTTCCTGCAGACCAAAGCCACGGTT
GATAAGCGGTACTACGCTCCACAAAACGACCCCAGCTATCCCATCTCACACCAACGTCATTATA
CTGATATCTATCAGCATAAGAAAGATCTCCAAGAAATAAAACAGCCTGAGCTCCACTCTCCATG
TAATGTTCCAACGTGGATAACGAGTTGAATGTCTGACCCATATCGCCTATAATACCAAACTTGT
AGGAAGCATCTGGATGTACATGTGGTGGTGTAACAAACCAAAACTCTCGAGAAGATTCACCGCT
TTCAATCTTGTAATAGTATTTTGTATCATGCTCAAGGTCAGAGACAAGGCAGTGATGAATAAAG
CCAGACTTATACTTGTAAAACGTGTAGTTATGGTAAGTCCCTTGAGCAACAAACTCATATTTCC
CCTGAACCGCACCGTAATGTACTTGGCTAGAACCAGGTTCATCAGGTGTAACCCAAGAGATGAT
AACAGCTTTACCATCATAATCACCTTGAGTTATGTGTACTTGTTGTGGTGCATTATATCCTTTT
GGGACTTTGAAAACATGATGATCAAGTGGTATATCAACCGCAGGCCATTCAGATCGAATAAAAC
TACTTGTGATTCCAGATTCTCCTCTATATAACAACAATACTGAGCTCAAGAACACAGAGATTAT
CACCAAATGATTCATCACGTCACCAAATCTCGACTCAGTTTTTTTAC
						
					

						Genomic sequence
						
							CAAAAGGCGAATAGCTGGAGAGGACAATGATATGAGCAGATGCACGCCTAACAGCGTACCAAAG
AGGACTGCTACTTTTTGAGGCTAAGTAAGGCGTAGTGTAACGCTGAAGGTAATTCCTGAAAGGT
GTCACCTCCCCCTGTAAATGTTTTACATGTTTGAGAACTCTTAGGAGAAGCAAAAACAGAAGTC
AAGCGCACAATCGGAATAGAAATTACAAGTAATAGCTATAATGAATTTTTCATTTTCCTGTCCT
ATATTTAATCATATCAAAATTCATGTAACCAGTTCATTTATATCTTCTAATCTTCAGCATACTT
TCTTAAGAACCTTTTCCATTGATCTGTCTGAGAAACTGTTAAAATGCAAAAACCGTAGCAGTTC
GAACCACTCACTATTTTAAATTCCATAGGAGTCGAATTTATGCATAACCTATATGTTACTTGGC
TAGGTAGAAAGTAAGTATAAGATGAATCAGATATTAACCATGTATGGCATGTAATCTACTTCAT
GATTTCCTGCAGACCAAAGCCACGGTTGATAAGCGGTACTACGCTCCACAAAACGACCCCAGCT
ATCCCATCTCACACCAACGTCATTATACTGATATCTATCAGCATAAGAAAGATCTCCAAGAAAT
AAAACAGCCTGAGCTCCACTCTCCATGTAATGTTCCAACGTGGATAACGAGTTGAATGTCTGAC
CCATATCGCCTACAATTCGTAAGTAAAACTGAGTTTGGCTAGTACAGAGCTAGAGAAACAAGTC
AAGTAACTCTCATTGAAACAATACTACAAACTACCTCTGCAATGAATCTTAAAGCACAGTTGCA
TTTAGATCAAACTACTAACCTATAATACCAAACTTGTAGGAAGCATCTGGATGTACATGTGGTG
GTGTAACAAACCAAAACTCTCGAGAAGATTCACCGCTTTCAATCTTGTAATAGTATTTTGTATC
ATGCTGATAACAAAAAAAGAAAATCAGCATTTGTATGTAATCTAACCACCAAATATAAAATATA
AACTCAGATACCTCAAGGTCAGAGACAAGGCAGTGATGAATAAAGCCAGACTTATACTTGTAAA
ACGTGTAGTTATGGTAAGTCCCTTGAGCAACAAACTCATATTTCCCCTGAACCGCACCGTAATG
TACTTGGCTAGAACCAGGTTCATCAGGTGTAACCCAAGAGATGATAACAGCTTTACCATCATAA
TCACCTTGAGTTATGTGTACTTGTTGTGGTGCATTATATCCTTTTGGGACTTTGAAAACATGAT
GATCAAGTGGTATATCAACCGCAGGCCATTCAGATCGAATAAAACTACTTGTGATTCCAGATTC
TCCTCTATATAACAACAATACTGAGCTCAAGAACACAGAGATTATCACCAAATGATTCATCACG
TCACCAAATCTCGACTCAGTTTTTTTAC
						
					

			
		

Sequences
Splice junction sequence	CCAGATTCTCCTCTATATAACAACAATACTGAGCTCAAGAACACAGAGATTATCACCAAATGAT TCATCACGTCACCAAATCTCGACTCAGTTTTTTTACcaaaaggcgaatagctggagaggacaat gatatgagcagatgcacgcctaacagcgtaccaaagaggactgctactttttgaggctaagtaa ggcgtagt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 879 Transcript exons: 13109814-13109952,13110300-13110526,13110665-13110776,13 110849-13111249 CAAAAGGCGAATAGCTGGAGAGGACAATGATATGAGCAGATGCACGCCTAACAGCGTACCAAAG AGGACTGCTACTTTTTGAGGCTAAGTAAGGCGTAGTGTAACGCTGAAGGTAATTCCTGAAAGGT GTCACCTCCCCCATGTATGGCATGTAATCTACTTCATGATTTCCTGCAGACCAAAGCCACGGTT GATAAGCGGTACTACGCTCCACAAAACGACCCCAGCTATCCCATCTCACACCAACGTCATTATA CTGATATCTATCAGCATAAGAAAGATCTCCAAGAAATAAAACAGCCTGAGCTCCACTCTCCATG TAATGTTCCAACGTGGATAACGAGTTGAATGTCTGACCCATATCGCCTATAATACCAAACTTGT AGGAAGCATCTGGATGTACATGTGGTGGTGTAACAAACCAAAACTCTCGAGAAGATTCACCGCT TTCAATCTTGTAATAGTATTTTGTATCATGCTCAAGGTCAGAGACAAGGCAGTGATGAATAAAG CCAGACTTATACTTGTAAAACGTGTAGTTATGGTAAGTCCCTTGAGCAACAAACTCATATTTCC CCTGAACCGCACCGTAATGTACTTGGCTAGAACCAGGTTCATCAGGTGTAACCCAAGAGATGAT AACAGCTTTACCATCATAATCACCTTGAGTTATGTGTACTTGTTGTGGTGCATTATATCCTTTT GGGACTTTGAAAACATGATGATCAAGTGGTATATCAACCGCAGGCCATTCAGATCGAATAAAAC TACTTGTGATTCCAGATTCTCCTCTATATAACAACAATACTGAGCTCAAGAACACAGAGATTAT CACCAAATGATTCATCACGTCACCAAATCTCGACTCAGTTTTTTTAC
Genomic sequence	CAAAAGGCGAATAGCTGGAGAGGACAATGATATGAGCAGATGCACGCCTAACAGCGTACCAAAG AGGACTGCTACTTTTTGAGGCTAAGTAAGGCGTAGTGTAACGCTGAAGGTAATTCCTGAAAGGT GTCACCTCCCCCTGTAAATGTTTTACATGTTTGAGAACTCTTAGGAGAAGCAAAAACAGAAGTC AAGCGCACAATCGGAATAGAAATTACAAGTAATAGCTATAATGAATTTTTCATTTTCCTGTCCT ATATTTAATCATATCAAAATTCATGTAACCAGTTCATTTATATCTTCTAATCTTCAGCATACTT TCTTAAGAACCTTTTCCATTGATCTGTCTGAGAAACTGTTAAAATGCAAAAACCGTAGCAGTTC GAACCACTCACTATTTTAAATTCCATAGGAGTCGAATTTATGCATAACCTATATGTTACTTGGC TAGGTAGAAAGTAAGTATAAGATGAATCAGATATTAACCATGTATGGCATGTAATCTACTTCAT GATTTCCTGCAGACCAAAGCCACGGTTGATAAGCGGTACTACGCTCCACAAAACGACCCCAGCT ATCCCATCTCACACCAACGTCATTATACTGATATCTATCAGCATAAGAAAGATCTCCAAGAAAT AAAACAGCCTGAGCTCCACTCTCCATGTAATGTTCCAACGTGGATAACGAGTTGAATGTCTGAC CCATATCGCCTACAATTCGTAAGTAAAACTGAGTTTGGCTAGTACAGAGCTAGAGAAACAAGTC AAGTAACTCTCATTGAAACAATACTACAAACTACCTCTGCAATGAATCTTAAAGCACAGTTGCA TTTAGATCAAACTACTAACCTATAATACCAAACTTGTAGGAAGCATCTGGATGTACATGTGGTG GTGTAACAAACCAAAACTCTCGAGAAGATTCACCGCTTTCAATCTTGTAATAGTATTTTGTATC ATGCTGATAACAAAAAAAGAAAATCAGCATTTGTATGTAATCTAACCACCAAATATAAAATATA AACTCAGATACCTCAAGGTCAGAGACAAGGCAGTGATGAATAAAGCCAGACTTATACTTGTAAA ACGTGTAGTTATGGTAAGTCCCTTGAGCAACAAACTCATATTTCCCCTGAACCGCACCGTAATG TACTTGGCTAGAACCAGGTTCATCAGGTGTAACCCAAGAGATGATAACAGCTTTACCATCATAA TCACCTTGAGTTATGTGTACTTGTTGTGGTGCATTATATCCTTTTGGGACTTTGAAAACATGAT GATCAAGTGGTATATCAACCGCAGGCCATTCAGATCGAATAAAACTACTTGTGATTCCAGATTC TCCTCTATATAACAACAATACTGAGCTCAAGAACACAGAGATTATCACCAAATGATTCATCACG TCACCAAATCTCGACTCAGTTTTTTTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.206624135

Conservation Information
Conserved circRNAs	NA
PMCS	0.206624135

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13111218-13109816(-)
						
						Potential amino acid sequence
						
							MNHLVIISVFLSSVLLLYRGESGITSSFIRSEWPAVDIPLDHHVFKVPKGYNAPQQVHITQGDY
DGKAVIISWVTPDEPGSSQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHCLVSDLEHDTKY
YYKIESGESSREFWFVTPPHVHPDASYKFGIIGDMGQTFNSLSTLEHYMESGAQAVLFLGDLSY
ADRYQYNDVGVRWDSWGRFVERSTAYQPWLWSAGNHEVDYMPYMGEVTPFRNYLQRYTTPYLAS
KSSSPLWYAVRRASAHIIVLSSYSPFGKKTESRFGDVMNHLVIISVFLSSVLLLYRGESGITSS
FIRSEWPAVDIPLDHHVFKVPKGYNAPQQVHITQGDYDGKAVIISWVTPDEPGSSQVHYGAVQG
KYEFVAQGTYHNYTFYKYKSGFIHHCLVSDLEHDTKYYYKIESGESSREFWFVTPPHVHPDASY
KFGIIGDMGQTFNSLSTLEHYMESGAQAVLFLGDLSYADRYQYNDVGVRWDSWGRFVERSTAYQ
PWLWSAGNHEVDYMPYMGEVTPFRNYLQRYTTPYLASKSSSPLWYAVRRASAHIIVLSSYSPFG
KKTESRFGDVMNHLVIISVFLSSVLLLYRGESGITSSFIRSEWPAVDIPLDHHVFKVPKGYNAP
QQVHITQGDYDGKAVIISWVTPDEPGSSQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHCL
VSDLEHDTKYYYKIESGESSREFWFVTPPHVHPDASYKFGIIGDMGQTFNSLSTLEHYMESGAQ
AVLFLGDLSYADRYQYNDVGVRWDSWGRFVERSTAYQPWLWSAGNHEVDYMPYMGEVTPFRNYL
QRYTTPYLASKSSSPLWYAVRRASAHIIVLSSYSPFGKKTESRFGDVMNHLVIISVFLSSVLLL
YRGESGITSSFIRSEWPAVDIPLDHHVFKVPKGYNAPQQVHITQGDYDGKAVIISWVTPDEPGS
SQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHCLVSDLEHDTKYYYKIESGESSREFWFVT
PPHVHPDASYKFGIIGDMGQTFNSLSTLEHYMESGAQAVLFLGDLSYADRYQYNDVGVRWDSWG
RFVERSTAYQPWLWSAGNHEVDYMPYMGEVTPFRNYLQRYTTPYLASKSSSPLWYAVRRASAHI
IVLSSYSPF(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13111218-13109816(-)
Potential amino acid sequence	MNHLVIISVFLSSVLLLYRGESGITSSFIRSEWPAVDIPLDHHVFKVPKGYNAPQQVHITQGDY DGKAVIISWVTPDEPGSSQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHCLVSDLEHDTKY YYKIESGESSREFWFVTPPHVHPDASYKFGIIGDMGQTFNSLSTLEHYMESGAQAVLFLGDLSY ADRYQYNDVGVRWDSWGRFVERSTAYQPWLWSAGNHEVDYMPYMGEVTPFRNYLQRYTTPYLAS KSSSPLWYAVRRASAHIIVLSSYSPFGKKTESRFGDVMNHLVIISVFLSSVLLLYRGESGITSS FIRSEWPAVDIPLDHHVFKVPKGYNAPQQVHITQGDYDGKAVIISWVTPDEPGSSQVHYGAVQG KYEFVAQGTYHNYTFYKYKSGFIHHCLVSDLEHDTKYYYKIESGESSREFWFVTPPHVHPDASY KFGIIGDMGQTFNSLSTLEHYMESGAQAVLFLGDLSYADRYQYNDVGVRWDSWGRFVERSTAYQ PWLWSAGNHEVDYMPYMGEVTPFRNYLQRYTTPYLASKSSSPLWYAVRRASAHIIVLSSYSPFG KKTESRFGDVMNHLVIISVFLSSVLLLYRGESGITSSFIRSEWPAVDIPLDHHVFKVPKGYNAP QQVHITQGDYDGKAVIISWVTPDEPGSSQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHCL VSDLEHDTKYYYKIESGESSREFWFVTPPHVHPDASYKFGIIGDMGQTFNSLSTLEHYMESGAQ AVLFLGDLSYADRYQYNDVGVRWDSWGRFVERSTAYQPWLWSAGNHEVDYMPYMGEVTPFRNYL QRYTTPYLASKSSSPLWYAVRRASAHIIVLSSYSPFGKKTESRFGDVMNHLVIISVFLSSVLLL YRGESGITSSFIRSEWPAVDIPLDHHVFKVPKGYNAPQQVHITQGDYDGKAVIISWVTPDEPGS SQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHCLVSDLEHDTKYYYKIESGESSREFWFVT PPHVHPDASYKFGIIGDMGQTFNSLSTLEHYMESGAQAVLFLGDLSYADRYQYNDVGVRWDSWG RFVERSTAYQPWLWSAGNHEVDYMPYMGEVTPFRNYLQRYTTPYLASKSSSPLWYAVRRASAHI IVLSSYSPF(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G34850_circ_g.7

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