Detail information of BGIOSGA035020_circ_g.1


General Information
CircRNA Name BGIOSGA035020_circ_g.1
ID in PlantcircBase osi_circ_009406
Alias Chr11:6493220_6493549(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 5772417-5772746  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035020
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035020_circ_g.2 BGIOSGA035020_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA035020-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTTCCACCTAAGGGTCAGGGTCCACCCGTTCCATGTCCTTCGTATCAACAAGATGCTCTCGT
GTGCTGGGGCTGATAGGCTCCAAACTGGAATGAGGGggtgctaccgccagatcaagaacaagcc
gtaccccaagtcaaggtactgccgtggtgtccctgaccccaagatcaggatctatgatgttggc
atgaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCTACCGCCAGATCAAGAACAAGCCGTACCCCAAGTCAAGGTACTGCCGTGGTGTCCCTGA
CCCCAAGATCAGGATCTATGATGTTGGCATGAAGAAGAAGGGCGTGGATGAGTTCCCCTACTGT
GTGCACTTGGTGAGTTGGGAGAAGGAGAATGTCTCCAGTGAAGCTCTTGAGGCTGCCCGCATTG
CTTGCAACAAGTACATGACCAAGAATGCAGGAAAGGATGCCTTCCACCTAAGGGTCAGGGTCCA
CCCGTTCCATGTCCTTCGTATCAACAAGATGCTCTCGTGTGCTGGGGCTGATAGGCTCCAAACT
GGAATGAGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021