Plant Circular RNA Database

Detail information of Os01g0246100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os01g0246100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_001027
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 8051823-8053364  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0246100						
					
						Parent gene annotation
						
							Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01
t0246100-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0246100-01:2

General Information
CircRNA Name	Os01g0246100_circ_g.2
ID in PlantcircBase	osa_circ_001027
Alias	NA
Organism	Oryza sativa
Position	chr1: 8051823-8053364 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0246100
Parent gene annotation	Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01 t0246100-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0246100-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCATTGCACTAGAACATGTTGTTTGATCCCACACTGCTGACAAAGAACTAGAACTCCCAGAGG
TTGATGGTTGTGAACTATCATTTTGATACGCATCACccattctgcctcagcatctgtctctgca
tagctgaatctcttctgatatttggctttggcactactaagatggtggcatctgccacatattg
aagatttg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1277
Transcript exons: 8051823-8052098,8052364-8053364
CCATTCTGCCTCAGCATCTGTCTCTGCATAGCTGAATCTCTTCTGATATTTGGCTTTGGCACTA
CTAAGATGGTGGCATCTGCCACATATTGAAGATTTGTCATTTCCATTTTCCACTTCAACATAAT
AGGATCCTGTAGAATTAATTATTTTAAAACAGAGCGCGCAAAATCGTGGAGGGGGCTCAAAGAG
GAGTCTTTCCATCCCACATAAATTGCATGTGTTCTGATCAGGCAAGCCTTCAACTGATAGCAGC
TCTTCAGTCGGCACTTTGCTCTGAGAAGTATCATGGTTCAGAGTACACAAGTGATCTTTAAGCT
CCTCAGAAGTTAATGCATAAAGTACTGAGGCCCCTCTTCTCTTCCTTGCCCTCAGGCTGTCCCC
TGACAATGTTTGGTCCAATAAATCAACCTTTGCATCCTTCATCTCAATGTCACTATTTTCACGA
CGAAATTCTTCTTCAGTTTGTACAGCACTCCCCGACAATCTGACCATATCCATTCCATGTACAT
TATCGGTGCAAGCAATGTTGTCCCCCAAGGAAGTACAACATGGTGATTTTGTTGGTGAATTAGT
GACTTCAGATTGTACTGTTTCAGCAGATGCATAAGTCTCATTGGCAGCAGGTTGTTGTTCCTTT
GAAGCCTCCATTTCATTGACATGGACAAGATGGGGAACATCAACTTTCAAGCGTTTTGCTGGAT
AATGCTTGCCAGAAGATCCATCTGAAGCAGGTGAAGTCGGCTTTGATACAGTACTATTTGATGT
CTGTTCAGCTCTATCCACTGTCTTGCTTACAGGGCTACAAGCACCATAATTAGTCATGAAGCCC
TGCTGATGATGCATAAAGTGGTTGCTTAAATTTGAGCTTTTCTCCCTGGAGAAACCTTCATGAT
CAGAAGTATGCCCAAGTTTTTCTTTCATTTGAATGCATCGATCCCGTTTGTGCTCTCCATTGAT
GTACGGATGAATTTGAGCATGATACAAGTCACGGTTTCCAGTGGTAATGTTTGACTGATCTGAT
TGCTCTAGTGACCGACTCCACGTCTCTTGCTTCATCTCACATTCTATGTATTGTTGCAACAAAG
GTCCCTGACCGGTTGTGGGATACAAACTTTTATTGTTTGTGGAAAGGTTTTGTCCGTTCACTGT
TGAGAAAGAATCCATCGGAAGTGTTCTCATTGCACTAGAACATGTTGTTTGATCCCACACTGCT
GACAAAGAACTAGAACTCCCAGAGGTTGATGGTTGTGAACTATCATTTTGATACGCATCAC
						
					

						Genomic sequence
						
							CCATTCTGCCTCAGCATCTGTCTCTGCATAGCTGAATCTCTTCTGATATTTGGCTTTGGCACTA
CTAAGATGGTGGCATCTGCCACATATTGAAGATTTGTCATTTCCATTTTCCACTTCAACATAAT
AGGATCCTGTAGAATTAATTATTTTAAAACAGAGCGCGCAAAATCGTGGAGGGGGCTCAAAGAG
GAGTCTTTCCATCCCACATAAATTGCATGTGTTCTGATCAGGCAAGCCTTCAACTGATAGCAGC
TCTTCAGTCGGCACTTTGCTCTACAAAAAATAAGTTAATCATGTTAAGAGATATAAACTTTGCT
TAAAACAAGCACACACTCTGTACAATATAATCAAGAAAGCTTGAGTGACAACAAAACCCAAAAT
CTTAGTACCAAATGAAAATCAATTGAAAGTACATAATATTTAGTTAATTTTGCAGCTGCTCAGT
TTGAAAATTTCTCTAGACTACATCAACCAATAATAATCAAGTGCTTTACAATACTAGATAAATC
ATACAAGATCCAACAGGTTATTCACTCACCTGAGAAGTATCATGGTTCAGAGTACACAAGTGAT
CTTTAAGCTCCTCAGAAGTTAATGCATAAAGTACTGAGGCCCCTCTTCTCTTCCTTGCCCTCAG
GCTGTCCCCTGACAATGTTTGGTCCAATAAATCAACCTTTGCATCCTTCATCTCAATGTCACTA
TTTTCACGACGAAATTCTTCTTCAGTTTGTACAGCACTCCCCGACAATCTGACCATATCCATTC
CATGTACATTATCGGTGCAAGCAATGTTGTCCCCCAAGGAAGTACAACATGGTGATTTTGTTGG
TGAATTAGTGACTTCAGATTGTACTGTTTCAGCAGATGCATAAGTCTCATTGGCAGCAGGTTGT
TGTTCCTTTGAAGCCTCCATTTCATTGACATGGACAAGATGGGGAACATCAACTTTCAAGCGTT
TTGCTGGATAATGCTTGCCAGAAGATCCATCTGAAGCAGGTGAAGTCGGCTTTGATACAGTACT
ATTTGATGTCTGTTCAGCTCTATCCACTGTCTTGCTTACAGGGCTACAAGCACCATAATTAGTC
ATGAAGCCCTGCTGATGATGCATAAAGTGGTTGCTTAAATTTGAGCTTTTCTCCCTGGAGAAAC
CTTCATGATCAGAAGTATGCCCAAGTTTTTCTTTCATTTGAATGCATCGATCCCGTTTGTGCTC
TCCATTGATGTACGGATGAATTTGAGCATGATACAAGTCACGGTTTCCAGTGGTAATGTTTGAC
TGATCTGATTGCTCTAGTGACCGACTCCACGTCTCTTGCTTCATCTCACATTCTATGTATTGTT
GCAACAAAGGTCCCTGACCGGTTGTGGGATACAAACTTTTATTGTTTGTGGAAAGGTTTTGTCC
GTTCACTGTTGAGAAAGAATCCATCGGAAGTGTTCTCATTGCACTAGAACATGTTGTTTGATCC
CACACTGCTGACAAAGAACTAGAACTCCCAGAGGTTGATGGTTGTGAACTATCATTTTGATACG
CATCAC
						
					

			
		

Sequences
Splice junction sequence	CTCATTGCACTAGAACATGTTGTTTGATCCCACACTGCTGACAAAGAACTAGAACTCCCAGAGG TTGATGGTTGTGAACTATCATTTTGATACGCATCACccattctgcctcagcatctgtctctgca tagctgaatctcttctgatatttggctttggcactactaagatggtggcatctgccacatattg aagatttg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1277 Transcript exons: 8051823-8052098,8052364-8053364 CCATTCTGCCTCAGCATCTGTCTCTGCATAGCTGAATCTCTTCTGATATTTGGCTTTGGCACTA CTAAGATGGTGGCATCTGCCACATATTGAAGATTTGTCATTTCCATTTTCCACTTCAACATAAT AGGATCCTGTAGAATTAATTATTTTAAAACAGAGCGCGCAAAATCGTGGAGGGGGCTCAAAGAG GAGTCTTTCCATCCCACATAAATTGCATGTGTTCTGATCAGGCAAGCCTTCAACTGATAGCAGC TCTTCAGTCGGCACTTTGCTCTGAGAAGTATCATGGTTCAGAGTACACAAGTGATCTTTAAGCT CCTCAGAAGTTAATGCATAAAGTACTGAGGCCCCTCTTCTCTTCCTTGCCCTCAGGCTGTCCCC TGACAATGTTTGGTCCAATAAATCAACCTTTGCATCCTTCATCTCAATGTCACTATTTTCACGA CGAAATTCTTCTTCAGTTTGTACAGCACTCCCCGACAATCTGACCATATCCATTCCATGTACAT TATCGGTGCAAGCAATGTTGTCCCCCAAGGAAGTACAACATGGTGATTTTGTTGGTGAATTAGT GACTTCAGATTGTACTGTTTCAGCAGATGCATAAGTCTCATTGGCAGCAGGTTGTTGTTCCTTT GAAGCCTCCATTTCATTGACATGGACAAGATGGGGAACATCAACTTTCAAGCGTTTTGCTGGAT AATGCTTGCCAGAAGATCCATCTGAAGCAGGTGAAGTCGGCTTTGATACAGTACTATTTGATGT CTGTTCAGCTCTATCCACTGTCTTGCTTACAGGGCTACAAGCACCATAATTAGTCATGAAGCCC TGCTGATGATGCATAAAGTGGTTGCTTAAATTTGAGCTTTTCTCCCTGGAGAAACCTTCATGAT CAGAAGTATGCCCAAGTTTTTCTTTCATTTGAATGCATCGATCCCGTTTGTGCTCTCCATTGAT GTACGGATGAATTTGAGCATGATACAAGTCACGGTTTCCAGTGGTAATGTTTGACTGATCTGAT TGCTCTAGTGACCGACTCCACGTCTCTTGCTTCATCTCACATTCTATGTATTGTTGCAACAAAG GTCCCTGACCGGTTGTGGGATACAAACTTTTATTGTTTGTGGAAAGGTTTTGTCCGTTCACTGT TGAGAAAGAATCCATCGGAAGTGTTCTCATTGCACTAGAACATGTTGTTTGATCCCACACTGCT GACAAAGAACTAGAACTCCCAGAGGTTGATGGTTGTGAACTATCATTTTGATACGCATCAC
Genomic sequence	CCATTCTGCCTCAGCATCTGTCTCTGCATAGCTGAATCTCTTCTGATATTTGGCTTTGGCACTA CTAAGATGGTGGCATCTGCCACATATTGAAGATTTGTCATTTCCATTTTCCACTTCAACATAAT AGGATCCTGTAGAATTAATTATTTTAAAACAGAGCGCGCAAAATCGTGGAGGGGGCTCAAAGAG GAGTCTTTCCATCCCACATAAATTGCATGTGTTCTGATCAGGCAAGCCTTCAACTGATAGCAGC TCTTCAGTCGGCACTTTGCTCTACAAAAAATAAGTTAATCATGTTAAGAGATATAAACTTTGCT TAAAACAAGCACACACTCTGTACAATATAATCAAGAAAGCTTGAGTGACAACAAAACCCAAAAT CTTAGTACCAAATGAAAATCAATTGAAAGTACATAATATTTAGTTAATTTTGCAGCTGCTCAGT TTGAAAATTTCTCTAGACTACATCAACCAATAATAATCAAGTGCTTTACAATACTAGATAAATC ATACAAGATCCAACAGGTTATTCACTCACCTGAGAAGTATCATGGTTCAGAGTACACAAGTGAT CTTTAAGCTCCTCAGAAGTTAATGCATAAAGTACTGAGGCCCCTCTTCTCTTCCTTGCCCTCAG GCTGTCCCCTGACAATGTTTGGTCCAATAAATCAACCTTTGCATCCTTCATCTCAATGTCACTA TTTTCACGACGAAATTCTTCTTCAGTTTGTACAGCACTCCCCGACAATCTGACCATATCCATTC CATGTACATTATCGGTGCAAGCAATGTTGTCCCCCAAGGAAGTACAACATGGTGATTTTGTTGG TGAATTAGTGACTTCAGATTGTACTGTTTCAGCAGATGCATAAGTCTCATTGGCAGCAGGTTGT TGTTCCTTTGAAGCCTCCATTTCATTGACATGGACAAGATGGGGAACATCAACTTTCAAGCGTT TTGCTGGATAATGCTTGCCAGAAGATCCATCTGAAGCAGGTGAAGTCGGCTTTGATACAGTACT ATTTGATGTCTGTTCAGCTCTATCCACTGTCTTGCTTACAGGGCTACAAGCACCATAATTAGTC ATGAAGCCCTGCTGATGATGCATAAAGTGGTTGCTTAAATTTGAGCTTTTCTCCCTGGAGAAAC CTTCATGATCAGAAGTATGCCCAAGTTTTTCTTTCATTTGAATGCATCGATCCCGTTTGTGCTC TCCATTGATGTACGGATGAATTTGAGCATGATACAAGTCACGGTTTCCAGTGGTAATGTTTGAC TGATCTGATTGCTCTAGTGACCGACTCCACGTCTCTTGCTTCATCTCACATTCTATGTATTGTT GCAACAAAGGTCCCTGACCGGTTGTGGGATACAAACTTTTATTGTTTGTGGAAAGGTTTTGTCC GTTCACTGTTGAGAAAGAATCCATCGGAAGTGTTCTCATTGCACTAGAACATGTTGTTTGATCC CACACTGCTGACAAAGAACTAGAACTCCCAGAGGTTGATGGTTGTGAACTATCATTTTGATACG CATCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.231377037

Conservation Information
Conserved circRNAs	NA
PMCS	0.231377037

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8053333-8051912(+)
8051949-8053363(-)
8051828-8053268(-)
8053271-8053268(-)
						
						Potential amino acid sequence
						
							MVVNYHFDTHHPFCLSICLCIAESLLIFGFGTTKMVASATY*(+)
MLKWKMEMTNLQYVADATILVVPKPNIRRDSAMQRQMLRQNG*(-)
MGDAYQNDSSQPSTSGSSSSLSAVWDQTTCSSAMRTLPMDSFSTVNGQNLSTNNKSLYPTTGQG
PLLQQYIECEMKQETWSRSLEQSDQSNITTGNRDLYHAQIHPYINGEHKRDRCIQMKEKLGHTS
DHEGFSREKSSNLSNHFMHHQQGFMTNYGACSPVSKTVDRAEQTSNSTVSKPTSPASDGSSGKH
YPAKRLKVDVPHLVHVNEMEASKEQQPAANETYASAETVQSEVTNSPTKSPCCTSLGDNIACTD
NVHGMDMVRLSGSAVQTEEEFRRENSDIEMKDAKVDLLDQTLSGDSLRARKRRGASVLYALTSE
ELKDHLCTLNHDTSQSKVPTEELLSVEGLPDQNTCNLCGMERLLFEPPPRFCALCFKIINSTGS
YYVEVENGNDKSSICGRCHHLSSAKAKYQKRFSYAETDAEAEWVMRIKMIVHNHQPLGVLVLCQ
QCGIKQHVLVQ*(-)
MRTLPMDSFSTVNGQNLSTNNKSLYPTTGQGPLLQQYIECEMKQETWSRSLEQSDQSNITTGNR
DLYHAQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKSSNLSNHFMHHQQGFMTNYGACSP
VSKTVDRAEQTSNSTVSKPTSPASDGSSGKHYPAKRLKVDVPHLVHVNEMEASKEQQPAANETY
ASAETVQSEVTNSPTKSPCCTSLGDNIACTDNVHGMDMVRLSGSAVQTEEEFRRENSDIEMKDA
KVDLLDQTLSGDSLRARKRRGASVLYALTSEELKDHLCTLNHDTSQSKVPTEELLSVEGLPDQN
TCNLCGMERLLFEPPPRFCALCFKIINSTGSYYVEVENGNDKSSICGRCHHLSSAKAKYQKRFS
YAETDAEAEWVMRIKMIVHNHQPLGVLVLCQQCGIKQHVLVQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8053333-8051912(+) 8051949-8053363(-) 8051828-8053268(-) 8053271-8053268(-)
Potential amino acid sequence	MVVNYHFDTHHPFCLSICLCIAESLLIFGFGTTKMVASATY(+) MLKWKMEMTNLQYVADATILVVPKPNIRRDSAMQRQMLRQNG(-) MGDAYQNDSSQPSTSGSSSSLSAVWDQTTCSSAMRTLPMDSFSTVNGQNLSTNNKSLYPTTGQG PLLQQYIECEMKQETWSRSLEQSDQSNITTGNRDLYHAQIHPYINGEHKRDRCIQMKEKLGHTS DHEGFSREKSSNLSNHFMHHQQGFMTNYGACSPVSKTVDRAEQTSNSTVSKPTSPASDGSSGKH YPAKRLKVDVPHLVHVNEMEASKEQQPAANETYASAETVQSEVTNSPTKSPCCTSLGDNIACTD NVHGMDMVRLSGSAVQTEEEFRRENSDIEMKDAKVDLLDQTLSGDSLRARKRRGASVLYALTSE ELKDHLCTLNHDTSQSKVPTEELLSVEGLPDQNTCNLCGMERLLFEPPPRFCALCFKIINSTGS YYVEVENGNDKSSICGRCHHLSSAKAKYQKRFSYAETDAEAEWVMRIKMIVHNHQPLGVLVLCQ QCGIKQHVLVQ(-) MRTLPMDSFSTVNGQNLSTNNKSLYPTTGQGPLLQQYIECEMKQETWSRSLEQSDQSNITTGNR DLYHAQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKSSNLSNHFMHHQQGFMTNYGACSP VSKTVDRAEQTSNSTVSKPTSPASDGSSGKHYPAKRLKVDVPHLVHVNEMEASKEQQPAANETY ASAETVQSEVTNSPTKSPCCTSLGDNIACTDNVHGMDMVRLSGSAVQTEEEFRRENSDIEMKDA KVDLLDQTLSGDSLRARKRRGASVLYALTSEELKDHLCTLNHDTSQSKVPTEELLSVEGLPDQN TCNLCGMERLLFEPPPRFCALCFKIINSTGSYYVEVENGNDKSSICGRCHHLSSAKAKYQKRFS YAETDAEAEWVMRIKMIVHNHQPLGVLVLCQQCGIKQHVLVQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0246100_circ_g.2

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