Detail information of AT2G02860_circ_g.2


General Information
CircRNA Name AT2G02860_circ_g.2
ID in PlantcircBase ath_circ_012617
Alias NA
Organism Arabidpsis thaliana
Position chr2: 830088-830349  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G02860
Parent gene annotation Sucrose transport protein SUC3
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACAAACGTGAGAGTGTTTCGTAAAGACCAGCCCATTCCATTGCAATTTAGAAAGCTTAGTA
AGATGCATGTGTCAGAAAATTAAACATACTGCTTACttaaaacatatagaacaatatattcaga
ttttagactatgaaacaagaacaaaagccactgggtgcaataatataatttcactttcaaaatc
acctcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAAAACATATAGAACAATATATTCAGATTTTAGACTATGAAACAAGAACAAAAGCCACTGGGT
GCAATAATATAATTTCACTTTCAAAATCACCTCAAAAATAATATAGACATACAAACAGAACGCA
TTGATTTGCGACATATATGAATCACAAGTCACAATGTACAAACGTGAGAGTGTTTCGTAAAGAC
CAGCCCATTCCATTGCAATTTAGAAAGCTTAGTAAGATGCATGTGTCAGAAAATTAAACATACT
GCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.255860461
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017