Detail information of BGIOSGA010887_circ_igg.1


General Information
CircRNA Name BGIOSGA010887_circ_igg.1
ID in PlantcircBase osi_circ_012901
Alias Chr03:11067586_11072582(MH63RS2), Chr03:11067586_11072582(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 12003731-12008729  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA010887_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCAAGTTCCTGACTTGGAAAATCCAGGGGCACCATACTAATGGAGGCCGCATTACCAGAAG
GTTGGTGTTTTCTAAGAGCCATGTATACAGCACCAAcccatgatagcagcaagcacaaagcggt
tatccaaactccaaacaatcatattaacaccacgaggagtaggctggtatctttgacgtggacc
accgcgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCATGATAGCAGCAAGCACAAAGCGGTTATCCAAACTCCAAACAATCATATTAACACCACGAG
GAGTAGGCTGGTATCTTTGACGTGGACCACCGCGAGGTGGTTGAGGAGCCATTGGAGGTGGAGG
AACTTTAAGATGGTAAGCTCGTGTCCAACGTCCAACCTTTCCCTAGATCAACACCAATAACATG
TCATGAAAAAAAAATATTTTTGAATGGAAGTATAGAGAAAGAGCACTAAAGATGTCTGCATTTC
CACAGTACAGATTAGCAACCAATAAACGTGCCTTACCCAGTATGTGTGGTACAATATTACAGTT
GGTTGCTAAGGCAGGTAGATTGTACACTGGCCAACCCTTACTAAACAACCTCTAACACTAGCAA
TTCATCATGTGAAACAATAAAAATACACGGTGATCGCATAAGAAAACAAAATGGGCAATTATTC
AGCAAGCGTTTCATATACCGTAGCAATGGACAGAACAGGCAGTTATGCAAATCACAATATAACT
GTTAATCTAAAAACACTTTTTCAGGAGCGAAATCAAGAGATCTAGATCACATGAGCTTACATGT
GATCTCCGAGATCGTGGAACCCAGATAATTGCACTGCCATCACGGGAGCAGGTGACAATATTAT
GTGTGAACCTAGCAAAAGCAGAAAATTTCAGCTGAAGTGAAACCGTTGAAACCAAAAAGGCACA
ATTTGCACAATAGGTAAGATAACTGAAGGAGCTAAAGACATTAACACAATAAACATGTATAAGG
AACAAGCAGACCATAAATAAGAGTAAAATACTGACCAGGAGTTTCTTAGCTTAAGATTATTTTC
TTCCTTAATGGTGTGAGTGGTGTCAACTGAAAAGGACCTAGAAGCCACCGCACATCCACTAAAC
TGCACATAGTTTACATCATTTTCATGGCCAGACAATAGATCCATCTCATGATTCGGCTGGTCAT
GTTCCTCAGAAGAACTCTTGCAAGCATTCCATACCTGCAATCAACATTTCTAATGAAAAAGGGC
AATTCACCTATTGATTTTAAAATCAGTAGTTCACTAGTGGACGACAACAAAATAAATAATATAC
CCTTGCAAAGGTGTCTGAGCTACCAGTAACAAATACAGTTCCATTCGCATTGAACGCACAACAT
AAGATTTGGTGATTCGTTGGTTGAACTTGAACAGCACTAGAAGATGCATCACCACCCTTGCCTG
GCATAAACACCACATGATTGAATTAACTAGATATAGGCATTACCCATGCAATGGACATGCTTCA
ATAAACTAACCAGGGGCAACATCTGGAGGTTTTGGTATATATATACGTGGAGATTGTTGAGATT
GTCTGGCATCCCAAATCCTGCATGTCCCATCATCTGATGATCTGCACACCAATATTGTGTACAA
AATTGAGAGAAAAATAGCAAGCAAATAACAAATTGCAAGATCAAGGGTACATACAGCAAACAAG
ATAAGGCTATATCACAAGAATATATATGGAATAAACATATTGTAATAAATCTGACATGCATAAG
CATTCTTCATGGTATGAAAATCGCACTTATGAGATCTGCAGCGTTCAAAAAGAAAGTTACATTT
ACATTAAAGAAAAATCACATGATACACCATGGGGTGTACCATTTCCTTTATTAGGAAATGGCAT
ACTAGTGTCCACTAGAACAGTTACATAATTCACATAGGTATTAGTAACTTTAATTGCTATGTGC
ACAAATAAGTAGGACTGAACAAATTAAGTTCACTCACATACTCTGGAATAGATAAGTCTTCATA
TATCGCCTGTGATATACTCCCTCCGTTTCAGGTTATAAGACGTTTTGACTTTGGTTAAAGTCCA
ACTACTTTAAGTTTGACTAACTCTATGGAAAAAAGTAGTAATATTTACAACACCAGCATAGTTT
CATTAAATCAATAATTGAATAAATTTTCATAATATATTAGTCTTGGGTTAAAATTACTACTTTT
TTCTACAAAATTAGTCAAACTTAGAGTAGTTTGACTTTGACCAAAGTCAAAACGTCTTATAACC
TGAAACGGAGGGAGTAGTAAACAACTTACAGATATATCTCTGCAGTTTCCTTTTAGTGTGTACA
TAAGTAGTTTGGTGTCTCAGACAAGCTTCAGGTTTGGCTAAGGCTACATTCGTTTCTCTGGCTT
GGGAACTCATTCCCTCCGCACGGAAAACGGAGCGGTCCATTAGCACGTGATTAATTAAGTATTA
GCTAATTTTTTTTCAAAAATGGATCAATATGATTTTTTTTAGCAATTTTCATATAGAAACTTTT
TTGCAAAAAAAAGTAAAGTTTAGCAGTTTGAAAAGCGTGCACGTGGAATACGAGGAAGAGGGGT
TGGGAACAAAGAGCAACGAACACAGCCTAAAGCAGATTGAACACCGAATTGTATACCATAGACT
GATGACAAGTTTATCCTTTCAGTTTATGCTTTTATGAAAATACTATAGAATAAAGTATTCAGAA
AGATACGAGCACTCACGACAACAGCTGGAAAGCAGCACCGGGCCTTGGACTAAATGCAATGGCG
GTTACAACCCCTGTATGCCCCTTCAGCACTGAGATAGGCAGGCCATCAGGTATACGCCACTACA
TTAGTGAGTAGTAAACAGAGTCATTAACAGGAAAGGAAGAAAGATATTATCACAGTTATTGAGA
AAGCATACAATGAACTTACAACTCTAATAATGAAATCATTGGATGAAGATGCTACCACAGCATT
ATTGGAACTCACTGCGAGGTCAGTAATATCACCCTTAATTCGAAAAAAAAGGGCAGTAAGTTTT
CTGATGAAAGGTTGTAAATGTTATTATGTTACAATAAGCAAAACTTACTTCATGACCTCGGCAG
CTAGCCAGACAAAATGCTGTTTCCATTGCCCAAATTTTAACAAGGCGATCATCAGAACCAGTAA
TAACATAACGTCCCGTTCGATCAAAAGTAGCTGCAGAAACAGAAACAATCTCAGTCTGAAAAAA
CAATAGAGCAGATAAAAGAGAGAAAATGTAAAAAACAACAAGGTATGATGGTCTAGAACAAATT
AACAAAAGGACAAGGCAGTAGCTACATTTGTTGAAGATATAGGGATAAGTCCTTTAGTAATGTT
GCATAATTTAGCAAATTGTAAAGTTAATATCAGTAACCATTTTGCTGAATAGACCGTGGCAGTA
TGGCGCATATGGTCACTGTAGATACTCAAAACAACAACCATGGAATGATGTATCCACGGAAAAA
TATTCAAATAACTTATTCAAGCATTATGTGTTAAGAAAAAAGAAAGACCAACAGACCACAATAC
ACAGCATTTTGATGTCCCCTTAATCTCTTTATAATCTGCATCTTTTCAACAAGGGTCGATGGCT
TCGCAATGGCATAGCATGACGCGCGTACAGACGGAGCTCGGCGATGTTTAGTGAAACCGCCAAT
CTCTCTCAGACTTAAACCGCGAACTTGATCGGCTTGTATGTGTGGCCAACGGAGATAACGCAAC
AGCTTGGGATTTTCCTTTTCTTGCCTGCTTGTATCAGCTGAAGGATCCAAGATTTCTCATAAGC
AGTTCAGCACATAGCAATTATAACAGCGAAAATGTACATAACATAAATCAAACTAGCGAAACTA
GGAACACAAGGTTGGGTAGAAATGAAATTATAAACAGCTCATCGGGACTAGAAGAACATAGTGT
ACATACATGCAAGAAGGGAGAAGGAACTTGATCCAAGAAGCGTTGGGACATCAGCAGCATTTGG
AGAAACCCCTCCAACCAAGCCATGTGGGTGGCAAGAACTAAAAATCAGCTGCTTTAAAAGCTTT
ACCAAGTGGTCTTTACCAATGTGGGGGTATCTACAAAATGAGCAGCATAAACAAAAGTATGTGA
AATGCTCAGTGTCATGTGATCATTGAGAAAATAAAGCAGATAATAACTGGTCTGCCACGGCAAG
GGACAGTTGTATGTGTTTGTTCATCTGTTATGCTCAAATTATATCCTAACACATTAACAAACTA
GCAGCAGTTTAAGAAACATAAAGCTTCATCAGTTCAATATTTGTCCCAAAAATACGAAAACGTT
GTATGTTCACCTTCTATGTTATACAATGCAACCTTTGCAGAATACAGGTTTGAGAACATAAAGT
TTAATCAACTCTAGGTAAGTTACACAAACACTGAAAAACATACTAGTATTCTTTCTGTTCACTC
CCATTGTGAAATGTTATATATGTAATACCATTACAAAAAATCTGACGTTTCAGAAATAGTATGA
TTCATCAGCTCTAGAATCTAGACTAGCACACCAGGGAAGAGTGATGAAGTATGAACTCCACAGG
AGAAGACAGATGGATACAATACCAGATATTTTTCAATTGTTTCCCAATTTTACTCTAAGAAACT
GAGAAGCATCTCCAGTTCACTACAGGCATAATATTATTTTTATGTGCTCCGAGCAGAATGAACC
TCTAGTTTCTTGCGTCATAAAAATCCTTAATTAACAATAATTAATATAATAGCACAAAACTGGT
CTGGAAATTTTCACTTTGAATTCCAGACCTCAACATCCTGATGATCTTTCAGAACCAACATTGG
AATGAACGGATAAATAGTTACCTCTCAACTAACTTTAGGTATCCCAAAGGGAGTGATATGCCAT
CATCATTTTCTTCACCGCTATGAAAACCACCTCGTGAATACCAAGCATGATATCTTCTAGGTAG
CAGCTGATGTTCAAGGAGCTCATTGCAGAGTTCTCCAACAGTCCGCTTAAATGGACCATGTGAT
AAAAAATGCATGATGAGAAAGTAAACTTCCCTCATATCAACATCAACATCAGCCTCAGGTGGAA
CATCTGTTGCTACCACTGGATTGACAGAATTAACCTTCTCAAGTTCCTGACTTGGAAAATCCAG
GGGCACCATACTAATGGAGGCCGCATTACCAGAAGGTTGGTGTTTTCTAAGAGCCATGTATACA
GCACCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021