Detail information of Os12g0448900_circ_g.3


General Information
CircRNA Name Os12g0448900_circ_g.3
ID in PlantcircBase osa_circ_011425
Alias Os_ciR3695
Organism Oryza sativa
Position chr12: 15331206-15331895  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os12g0448900
Parent gene annotation Fatty acid alpha-dioxygenase family, Enzyme that oxygenates fatt
y acids into 2R-hydroperoxides (Os12t0448900-01)
Parent gene strand -
Alternative splicing Os12g0448900_circ_g.1 Os12g0448900_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os12t0448900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAACTTGGATAGTTCCATAGTTCAAGTGCACCACAAGCTTGATATCCCATTGATAATGCTTG
TTTTTCAAACCCTATTTTTGATAGCTGTTCTTCCCCcttggtacacttctctccctgtctcggt
atactttaatttagaggaaaagaaaatgatattaatctcagtgtaatcattgtcaaaaggcatt
agacacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGTACACTTCTCTCCCTGTCTCGGTATACTTTAATTTAGAGGAAAAGAAAATGATATTAAT
CTCAGTGTAATCATTGTCAAAAGGCATTAGACACAGCAGTACAATGTCCTCTTTACTTAACTTG
GATAGTACAGTTTTTGCTTAACATTTTTATTTATACTAGTACGCAGCAATGTCCTTGTTTTTTA
AATAAATGCTAGTTAAGGTTACAACATATACAAACATGATATATGTCTCGGTAAGAGAATCTTG
TATTTTCAATCTGGTTAGTACAATAATAGTTCGAGAATTCTTGAAAATTGAAAAGTATGTTGTG
ATAAATTTCAACATAGTAGTTTAATTAAGGTCACAATACTTGTTCTAGCACTTCATTTGTTGCC
AGTGTGAGTTATTTTCAATATTTTTATGCATTGGATTATTCTTGGTGGACCCTAGCTTGTACCA
ACTTGACATGGTGCAAAATCATGATCCTCTACTGGTAGTGGTATAAATTGAGTCTAAATTTTAA
TTATACCTTCTAGGGCAGCAAGGTCGATTCTGTCAGATCGATTGGTACCATCCAAATTTTGTGG
AATGAGGTTCCTGAAGAAACTTGGATAGTTCCATAGTTCAAGTGCACCACAAGCTTGATATCCC
ATTGATAATGCTTGTTTTTCAAACCCTATTTTTGATAGCTGTTCTTCCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.421773188
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015