Detail information of BGIOSGA029403_circ_g.2


General Information
CircRNA Name BGIOSGA029403_circ_g.2
ID in PlantcircBase osi_circ_008185
Alias 9:19367416|19368365
Organism Oryza sativa ssp. indica
Position chr9: 19367416-19368365  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA029403
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA029403-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCTTCCGGCGATGTATATCACACAACAAACGCTTCTCCCCTCGCCGGAAGCAGTCGTTGGC
GAACTCCCACCGGTCCGGCACGATCTTCCTAAATCCctggagctggacccgtcttggtcggacc
cggccctgtccggcccgttgcaagtgggcctgaccgcgtggtacatgggggttggccggtatat
gggccacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAGCTGGACCCGTCTTGGTCGGACCCGGCCCTGTCCGGCCCGTTGCAAGTGGGCCTGACCG
CGTGGTACATGGGGGTTGGCCGGTATATGGGCCACGGGTGCGACTCCGGCGACGCCTCCGTGCT
GCTTCCGCCGCCGCCGCCGGCGGGATGCGGATCCGCCGCCTCCGGCTTCACGTCCGCGCCGCCG
TGCTCGGCCTGATCCTCGCCGCCGCCGTCTTCGTCGGCGGCGGCGGCGGCGTCGTCTCGCGTCC
GCTTCAGGCCGATGGAGACGCCGAACAGCCGCGCGCTCGGGTCGGGCTCGCCGTCTATGGCGAG
CCCCGCAGCGGCGGCGGCGGTGGCCAGGGCGGGGCACGAGGGCATTAGATCGAGTATCGCCGGG
GGGAGAGGCGGCGGCGGGGGAACGGCCTCCGACGACTCGCCGGAGCAGTTCGCTATGGAGGATA
TCCCCGCGGAGCCCTCCACGTGCTGGGTGGCGGCGTACTTGGACATGAGGAGGAGGATGTTGTT
ACAGAGCTTCTTCATGTGGCCGAGCTCCCGCGTCAGCCGCGCGTTCTCCCGCCGGAGCCGCTCG
TTCTCCTCGCCCATGTCGCCGCCGGACGCGGAGCCGCCGCCGCCGCCGCCGGGCGCAGAGCCGG
ACCCGGACGCTTGCCGGTGCTCCTCCCCCGACCCAGAGTTTGACGACAGCACCTGCTCCTCCGA
GGAGTGCGCCGGCGAGCCCGCCCGCGTCACCGGCAGCGCCATAGGTATCGGCGCCGCGGCCACC
GTCACAGCTCCCGAAGCCACCGCGGCAGCTGCCGTCGCCATCCCCGGCGACGGCGGCGGCGGCG
CCGCGGCCGCCGCCGCCACCACCTTCCGGCGATGTATATCACACAACAAACGCTTCTCCCCTCG
CCGGAAGCAGTCGTTGGCGAACTCCCACCGGTCCGGCACGATCTTCCTAAATCC
Conservation Information
Conserved circRNAs osa_circ_039919*
PMCS
Functional Information
Coding potential Y
Potential coding position 19368226-19368187(-)
19367684-19367473(+)
19368280-19367616(+)
Potential amino acid sequence MATAAAAVASGAVTVAAAPIPMALPVTRAGSPAHSSEEQVLSSNSGSGEEHRQASGSGSAPGGG
GGGSASGGDMGEENERLRRENARLTRELGHMKKLCNNILLLMSKYAATQHVEGSAGISSIANCS
GESSEAVPPPPPLPPAILDLMPSCPALATAAAAAGLAIDGEPDPSARLFGVSIGLKRTRDDAAA
AADEDGGGEDQAEHGGADVKPEAADPHPAGGGGGSSTEASPESHPWPIYRPTPMYHAVRPTCNG
PDRAGSDQDGSSSRDLGRSCRTGGSSPTTASGEGRSVCCVIYIAGRWWRRRPRRRRRRRRGWRR
QLPRWLREL*(-)
METPNSRALGSGSPSMASPAAAAAVARAGHEGIRSSIAGGRGGGGGTASDDSPEQFAMEDIPAE
PSTCWVAAYLDMRRRMLLQSFFMWPSSRVSRAFSRRSRSFSSPMSPPDAEPPPPPPGAEPDPDA
CRCSSPDPEFDDSTCSSEECAGEPARVTGSAIGIGAAATVTAPEATAAAAVAIPGDGGGGAAAA
AATTFRRCISHNKRFSPRRKQSLANSHRSGTIFLNPWSWTRLGRTRPCPARCKWA*(+)
MYITQQTLLPSPEAVVGELPPVRHDLPKSLELDPSWSDPALSGPLQVGLTAWYMGVGRYMGHGC
DSGDASVLLPPPPPAGCGSAASGFTSAPPCSA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021