Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024531_circ_g.2 |
ID in PlantcircBase | zma_circ_010225 |
Alias | Zm10circ00025, GRMZM2G110145_C1 |
Organism | Zea mays |
Position | chr10: 76631178-76631937 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d024531 |
Parent gene annotation |
Putative cellulose synthase-like family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d024531_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d024531_T005:1 Zm00001d024531_T004:1 Zm00001d024531_T001:1 Zm00001d024531_T006:1 Zm00001d024531_T002:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.367437841 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
76631561-76631888(+) 76631503-76631827(-) |
Potential amino acid sequence |
MLLTYEAMAEAAKFATVWVPFCRKHGIEPRGPESYFDLKSHPYMGRSQEDFVNDRRRVRKDYDE FKARINGLDHDIKQRSDAYNAARGLKDGEPRATWMADGTQWEGTWVEPSENHRKGDHAGIVLGA DLRPADRVHAVRNLAHLAPQPGRAVAVGDVDRGRVLVRLLVAAGPAAEAEPDQPRAGPGGAAAA VRPRGRGRRRRDVAAAGAGRVRDDGGPVQGADPEHGQLRAVHPGRRLPRGAQHVLPLRRLRDAA HLRGHGGGRQVRHRLGALLPQARHRAARPRELLRPQVPPLHGPLPGGLRQRPPPRAQGLRRVQG AHQRPRPRHQAEVRRVQRRQGAQGRRAQGNLDGRRHPVGGHMG*(+) MDSTELAVLRIGSLNGSAVVTNTSSPGSSDVPPPAPPPARSNRCRSAARSGTRLIGFSFGSWSS SHEKPNQNSPAIDVTHSHSASGLRCEMRQITNSVNAISRTKISTQYDAGVVSLAVVLGGLNPCA LPLGAVGHPGCPGLAVLEPPGGVVRVGPLLDVVVEAVDARLELVVVLAHAAAVVDEVLLGAAHV RVGLEVEVALGAARLDAVLAAEGHPDGGELGGLRHGLVGEQHPGVVGEVARVALHGVVGGQDGQ HGVGRAQDRLLERVRRRHEHVQPRQQRRPSAGAPARAVEPLPQRRQVRHAVDRVQLRQLVQQPR EAEPELARDRRHPQPQRVRVAVRDAPDYEQRERDQPDEDQHPVRCRRGLPCGGSRRAQPMCPPT GCRRPSRLPWARRP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |