Plant Circular RNA Database

Detail information of Os06g0499900_circ_g.10

			
						 General Information
					
						CircRNA Name
						Os06g0499900_circ_g.10
					
						ID in PlantcircBase
						osa_circ_030977
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 17605346-17606861  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							Os06g0499900						
					
						Parent gene annotation
						
							Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0499900_circ_g.9 Os06g0499900_circ_g.11 						
					
						Support reads
						2
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0499900-01:4

General Information
CircRNA Name	Os06g0499900_circ_g.10
ID in PlantcircBase	osa_circ_030977
Alias	NA
Organism	Oryza sativa
Position	chr6: 17605346-17606861 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	Os06g0499900
Parent gene annotation	Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD C (Fragment). (Os06t0499900-01)
Parent gene strand	-
Alternative splicing	Os06g0499900_circ_g.9 Os06g0499900_circ_g.11
Support reads	2
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0499900-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACCTGAAAAGATGGCATATAAGTTACACTGTGGATAAGAAGGGGATAAATCTTTTGGCTAACC
TTGTAATGTCTGCCCAGTGACGCTAGATATGAAGGCcttttcaccttcttgttttctccatttt
gcaatgttaccttgattctaatgaaaaaatatattagattgccaatgatgtagacagggggaac
acaatgag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTTCACCTTCTTGTTTTCTCCATTTTGCAATGTTACCTTGATTCTAATGAAAAAATATATTA
GATTGCCAATGATGTAGACAGGGGGAACACAATGAGCCATCAGTAAATATTAATATGCCGATGC
TTATGTTTTTACCATAGTAGGGGATAATGCAGGCATCCCAACCACCAGATGAGGAGGAAACCCT
GTTGGAGAGAGTTAAGGATATATTTAAAGGATATCTTTGTATTACATATTATAACAGTAGAAAA
AGGCTTCAAATTTCACTCTCAAGGTCTAGAAACCAACATAATAATATGATATAAGGAAAAAGGT
ATGCACTGTTAATTGTGATCTGTCCAAACTATACTAGCATCTTCAGGGCTTATTCGGTTTGGAG
GCATTTCAACCCATGGGAATAGGAAAAGTGGAGGAATAGGAATGCATGTACACATCAATCCATA
GGATTTTTTCCAAGAGGTTTGAGTAGATGGAAAAATTCCTAAGGAAAGGAAAATTTCTTTGATT
TTCCTGTACAGCATTCCTACAAACCGAATGACACTCATAGGAATTAATCCTTAGGGATCCAAAT
CCTTTATTTTTTTCTCCAATAAAAAGACTATTTGTATTTACAGCATTAGGTACAAGGGCCCTGC
TCACGTGCTGTGGGACGTATCCAGCTGCTACATGCAGAAACAGTGCCCATGGCCTGCTGCTGCA
GCCCAATAAGCTGCTGCCACAGCAGCCGAGCAGGCCCAATAGCTGTATATGAAATACATACTCT
ATTTTCAAATACAAAAGAACATGTATATACCTAGCCATGCAGGTGCGCAGGGAAGTCGATTAGT
TTAAAACTAACGCTGCTTCCGTGTTGTTTGCTTCCAGAACACTAAAGACACCACACAAATGTGC
AAAGGAAATAGAATGATACATTAATGGCTTACGGATTGCGTACTTAACTCTACAAATGGATGTA
CTTTATCAACTAACCTACGCTACTTAGAATAATCGTATCATAATGTACAAATGGATGTCTTGCT
TAGCATACCAACTTCTCTTTGCGGCAAGTGAGATTTCTCTTGATAATGTTGTGGAACAAACAAG
AAGCAAATAAACAAGTAAAACTTCGCATGTCCATGTTATTTATGATAAAATATATATATTTCAC
ATATTCAATTGATGCAAGCCATGAGGAGATAAGTTCCAAGTTCCAACAATTGCACTATGACGAG
AGCACAGAGTTCCATAAGCCATTAAATATTCTGTCTTGTATAATCTATAGTCGCCTGTGAATAC
AACGACCTATCCAAGGGATGTACTATTTCAACACATCCACACCAAAGAAGCAATATGCATACTA
CAATATGCCATATATTGGAAGGATGGGATAACATGATGTACCTGTTGAGGATAACCAACGAATT
TCCATGGGAACCTGAAAAGATGGCATATAAGTTACACTGTGGATAAGAAGGGGATAAATCTTTT
GGCTAACCTTGTAATGTCTGCCCAGTGACGCTAGATATGAAGGC
						
					

			
		

Sequences
Splice junction sequence	AACCTGAAAAGATGGCATATAAGTTACACTGTGGATAAGAAGGGGATAAATCTTTTGGCTAACC TTGTAATGTCTGCCCAGTGACGCTAGATATGAAGGCcttttcaccttcttgttttctccatttt gcaatgttaccttgattctaatgaaaaaatatattagattgccaatgatgtagacagggggaac acaatgag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTTCACCTTCTTGTTTTCTCCATTTTGCAATGTTACCTTGATTCTAATGAAAAAATATATTA GATTGCCAATGATGTAGACAGGGGGAACACAATGAGCCATCAGTAAATATTAATATGCCGATGC TTATGTTTTTACCATAGTAGGGGATAATGCAGGCATCCCAACCACCAGATGAGGAGGAAACCCT GTTGGAGAGAGTTAAGGATATATTTAAAGGATATCTTTGTATTACATATTATAACAGTAGAAAA AGGCTTCAAATTTCACTCTCAAGGTCTAGAAACCAACATAATAATATGATATAAGGAAAAAGGT ATGCACTGTTAATTGTGATCTGTCCAAACTATACTAGCATCTTCAGGGCTTATTCGGTTTGGAG GCATTTCAACCCATGGGAATAGGAAAAGTGGAGGAATAGGAATGCATGTACACATCAATCCATA GGATTTTTTCCAAGAGGTTTGAGTAGATGGAAAAATTCCTAAGGAAAGGAAAATTTCTTTGATT TTCCTGTACAGCATTCCTACAAACCGAATGACACTCATAGGAATTAATCCTTAGGGATCCAAAT CCTTTATTTTTTTCTCCAATAAAAAGACTATTTGTATTTACAGCATTAGGTACAAGGGCCCTGC TCACGTGCTGTGGGACGTATCCAGCTGCTACATGCAGAAACAGTGCCCATGGCCTGCTGCTGCA GCCCAATAAGCTGCTGCCACAGCAGCCGAGCAGGCCCAATAGCTGTATATGAAATACATACTCT ATTTTCAAATACAAAAGAACATGTATATACCTAGCCATGCAGGTGCGCAGGGAAGTCGATTAGT TTAAAACTAACGCTGCTTCCGTGTTGTTTGCTTCCAGAACACTAAAGACACCACACAAATGTGC AAAGGAAATAGAATGATACATTAATGGCTTACGGATTGCGTACTTAACTCTACAAATGGATGTA CTTTATCAACTAACCTACGCTACTTAGAATAATCGTATCATAATGTACAAATGGATGTCTTGCT TAGCATACCAACTTCTCTTTGCGGCAAGTGAGATTTCTCTTGATAATGTTGTGGAACAAACAAG AAGCAAATAAACAAGTAAAACTTCGCATGTCCATGTTATTTATGATAAAATATATATATTTCAC ATATTCAATTGATGCAAGCCATGAGGAGATAAGTTCCAAGTTCCAACAATTGCACTATGACGAG AGCACAGAGTTCCATAAGCCATTAAATATTCTGTCTTGTATAATCTATAGTCGCCTGTGAATAC AACGACCTATCCAAGGGATGTACTATTTCAACACATCCACACCAAAGAAGCAATATGCATACTA CAATATGCCATATATTGGAAGGATGGGATAACATGATGTACCTGTTGAGGATAACCAACGAATT TCCATGGGAACCTGAAAAGATGGCATATAAGTTACACTGTGGATAAGAAGGGGATAAATCTTTT GGCTAACCTTGTAATGTCTGCCCAGTGACGCTAGATATGAAGGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.102534532

Conservation Information
Conserved circRNAs	NA
PMCS	0.102534532

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17605501-17605385(+)
17606760-17605382(-)
						
						Potential amino acid sequence
						
							MQASQPPDEEETLLRITNEFPWEPCNVCPVTLDMKAFSPSCFLHFAMLP*(+)
MEIRWLSSTGFPPHLVVGMPALSPTMNQGNIAKWRKQEGEKAFISSVTGQTLQGSHGNSLVILN
RVSSSSGGWDACIIPYYESR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17605501-17605385(+) 17606760-17605382(-)
Potential amino acid sequence	MQASQPPDEEETLLRITNEFPWEPCNVCPVTLDMKAFSPSCFLHFAMLP(+) MEIRWLSSTGFPPHLVVGMPALSPTMNQGNIAKWRKQEGEKAFISSVTGQTLQGSHGNSLVILN RVSSSSGGWDACIIPYYESR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0499900_circ_g.10

Address

Any questions?

Supported by