Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d026127_circ_g.2 |
ID in PlantcircBase | zma_circ_010341 |
Alias | Zm10circ00063, GRMZM2G084491_C1 |
Organism | Zea mays |
Position | chr10: 139197995-139199265 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d026127 |
Parent gene annotation |
Patched family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d026127_circ_igg.1 Zm00001d026127_circ_ag.1 Zm00001d026127_circ_ag.2 Zm00001d026127_circ_igg.3 Zm00001d026127_circ_igg.4 Zm00001d026127_circ_igg.5 Zm00001d026127_circ_igg.6 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d026127_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.178459716 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
139198165-139199262(+) 139199238-139198164(+) 139198000-139199158(-) |
Potential amino acid sequence |
MKVGPPLYFVVKDFNYSSASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDF LIWMSPEAFGCCRKFVNGSYCPPDDQALSTRLQPGLEQQIVLPRNSYLQDYFDDLAKYMKVGPP LYFVVKDFNYSSASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDFLIWMSP EAFGCCRKFVNGSYCPPDDQALSTRLQPGLEQQIVLPRNSYLQDYFDDLAKYMKVGPPLYFVVK DFNYSSASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDFLIWMSPEAFGCC RKFVNGSYCPPDDQALSTRLQPGLEQQIVLPRNSYLQDYFDDLAKYMKVGPPLYFVVKDFNYSS ASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDFLIWMSPEAFGCCRKFVNG SYCPPDDQ(+) MEVTALQTIRHYLLDCNQDWSSKLFCHEIPIYRIILMTLQST*(+) MPDRLEGSNFHSQIFYSIQMLQGTSKLGSHQAMKQQV*(-) |
Sponge-miRNAs | zma-miR167h-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |