Detail information of Zm00001d026127_circ_g.2


General Information
CircRNA Name Zm00001d026127_circ_g.2
ID in PlantcircBase zma_circ_010341
Alias Zm10circ00063, GRMZM2G084491_C1
Organism Zea mays
Position chr10: 139197995-139199265  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2
Parent gene Zm00001d026127
Parent gene annotation Patched family protein
Parent gene strand +
Alternative splicing Zm00001d026127_circ_igg.1 Zm00001d026127_circ_ag.1 Zm00001d026127_circ_ag.2 Zm00001d026127_circ_igg.3 Zm00001d026127_circ_igg.4 Zm00001d026127_circ_igg.5 Zm00001d026127_circ_igg.6
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d026127_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTTCATGGCTTGATGACTTCCTAATTTGGATGTCCCCTGAAGCATTTGGATGCTGTAGAAAA
TTTGTGAATGGAAGTTACTGCCCTCCAGACGATCAGgcattatctactagactgcaaccaggat
tggagcagcaaattgttctgccacgaaattcctatttacaggtttccccctaaagagttttgag
ttcttctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 366
Transcript exons: 139197995-139198063,139198137-139198213,139198746-139198
815,139199116-139199265
GCATTATCTACTAGACTGCAACCAGGATTGGAGCAGCAAATTGTTCTGCCACGAAATTCCTATT
TACAGGATTATTTTGATGACCTTGCAAAGTACATGAAAGTAGGTCCACCATTATACTTTGTTGT
GAAGGACTTCAATTACAGCTCTGCGTCGGTGGATACAAATCAAATATGTTCAATCAGCCAGTGT
AATTCAAATTCTCTTTTGAATGAGATATCACGACAATCATTATCCCCTGAGACTAGTTACATTG
CTAAACCTGCTGCTTCATGGCTTGATGACTTCCTAATTTGGATGTCCCCTGAAGCATTTGGATG
CTGTAGAAAATTTGTGAATGGAAGTTACTGCCCTCCAGACGATCAG

Genomic sequence GCATTATCTACTAGACTGCAACCAGGATTGGAGCAGCAAATTGTTCTGCCACGAAATTCCTATT
TACAGGTTTCCCCCTAAAGAGTTTTGAGTTCTTCTTGAGGTGCCTTCCTTCAGATCACTCTGAT
CATTGTATTTCCAGGATTATTTTGATGACCTTGCAAAGTACATGAAAGTAGGTCCACCATTATA
CTTTGTTGTGAAGGACTTCAATTACAGGTATTTATGTATAAAAATAGTGCTCCCAAAGTTTATC
AAAGAAAAGAGTCACACTACGTGCAAATATACAAAATGTAATATTGACTCTTCCATCTTGCTTA
GTTCTTCAAATATGGTCAAGTCACTGTCATTTGTTGTTGGTGTGACAAATGTCACAAATGTTGC
ATATGATATATGCTTTCTTTCTTATGGAGAAAAAATAACATGCTGAATAACTGAACTTTCAGGT
TTCGATCATTCCTGATATGGTCATATAATAACAATAATAGCAAATCTTTTTGTTCCTGATATGC
AAAAAAGTTTTATAAAACAAAGTTTCTTATGTTGATTGACATGGTACAATTTAGTTTCTCTGTT
TGGTATACAAGTACAATGTGTTGAACTAAATAGGGACGGTGGAGATCCTTAAGGTCGCCGAATT
GCACCCAGAACATTATTTTCTCAAGCACACCCTGAAGCTCTTTTTTAAGTTGCATGCTTAAACA
GTGGTAGCCATGCTTGATTTATGATTTATTTTTATATTGTTTTCCAGCTCTGCGTCGGTGGATA
CAAATCAAATATGTTCAATCAGCCAGTGTAATTCAAATTCTCTTTTGAATGAGGTATATTATAT
TATCTTACTATGTTTTAACAAAGTTATGTTCCAGAATATCTTCAGTAGTAAATTACTCTTAGCT
CAGTTTACCAGTGCAATATATATCAGAGATGTGTTTGTTTATTACTCCCTCCATTCTTTTTTAT
TTGTCGTGTTTTAGTTAAAAAATAAGCTAGCGGGTGACAAATATTCGAGAATGGAGGGTAGTAT
AAGGTTACCCAGTGCAGGGTGCACACTGCAAACTGAGTATCCGGTACAACAGTTCATTTTGTTG
TGAAGATTGCATAACATGGTTTCAATCATGCAGATATCACGACAATCATTATCCCCTGAGACTA
GTTACATTGCTAAACCTGCTGCTTCATGGCTTGATGACTTCCTAATTTGGATGTCCCCTGAAGC
ATTTGGATGCTGTAGAAAATTTGTGAATGGAAGTTACTGCCCTCCAGACGATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.178459716
Functional Information
Coding potential Y
Potential coding position 139198165-139199262(+)
139199238-139198164(+)
139198000-139199158(-)
Potential amino acid sequence MKVGPPLYFVVKDFNYSSASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDF
LIWMSPEAFGCCRKFVNGSYCPPDDQALSTRLQPGLEQQIVLPRNSYLQDYFDDLAKYMKVGPP
LYFVVKDFNYSSASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDFLIWMSP
EAFGCCRKFVNGSYCPPDDQALSTRLQPGLEQQIVLPRNSYLQDYFDDLAKYMKVGPPLYFVVK
DFNYSSASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDFLIWMSPEAFGCC
RKFVNGSYCPPDDQALSTRLQPGLEQQIVLPRNSYLQDYFDDLAKYMKVGPPLYFVVKDFNYSS
ASVDTNQICSISQCNSNSLLNEISRQSLSPETSYIAKPAASWLDDFLIWMSPEAFGCCRKFVNG
SYCPPDDQ(+)
MEVTALQTIRHYLLDCNQDWSSKLFCHEIPIYRIILMTLQST*(+)
MPDRLEGSNFHSQIFYSIQMLQGTSKLGSHQAMKQQV*(-)
Sponge-miRNAs zma-miR167h-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019