Detail information of AT2G05710_circ_g.4


General Information
CircRNA Name AT2G05710_circ_g.4
ID in PlantcircBase ath_circ_012890
Alias 2:2142484-2143008
Organism Arabidpsis thaliana
Position chr2: 2142484-2143008  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGGTTGGAACTGATTCACATACAACTATGATTGATGGTTTGGGAGTTGCTGGATGGGGTGTT
GGGGGTATTGAAGCTGAGGCAACAATGCTTGGCCAGgttccggtggatcttgtgattgatcact
cggttcaagtagatgtagctcgatcagagaatgcagtgcaagcaaacatggagcttgagttcca
gaggaaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 348
Transcript exons: 2142484-2142669,2142847-2143008
GTTCCGGTGGATCTTGTGATTGATCACTCGGTTCAAGTAGATGTAGCTCGATCAGAGAATGCAG
TGCAAGCAAACATGGAGCTTGAGTTCCAGAGGAACAAGGAGAGGTTTGCTTTCCTTAAATGGGG
TTCTACTGCGTTCCAGAACATGCTTGTTGTGCCTCCTGGCTCTGGTATTGTGCATCAGGTCAAT
TTGGAATATCTTGGAAGAGTTGTGTTCAATACCAAAGGCCTTCTCTACCCAGACAGCGTGGTTG
GAACTGATTCACATACAACTATGATTGATGGTTTGGGAGTTGCTGGATGGGGTGTTGGGGGTAT
TGAAGCTGAGGCAACAATGCTTGGCCAG

Genomic sequence GTTCCGGTGGATCTTGTGATTGATCACTCGGTTCAAGTAGATGTAGCTCGATCAGAGAATGCAG
TGCAAGCAAACATGGAGCTTGAGTTCCAGAGGAACAAGGAGAGGTTTGCTTTCCTTAAATGGGG
TTCTACTGCGTTCCAGAACATGCTTGTTGTGCCTCCTGGCTCTGGTATTGTGCATCAGGTAATT
CTCTTTTTTAAAGTGTGCGAGTCCATAAGTTGTTTCTAAACTTGTTCTGACATTGATATATATC
CTTTTCAACCTCATGTTTCCAGTGTATTGAAATGTTTCTTTTCATTTATTATCTTCTTTTATCT
GTCTTGAAGTTTGTCTCAAACTAACCTCATCTTGAAAATTCAGGTCAATTTGGAATATCTTGGA
AGAGTTGTGTTCAATACCAAAGGCCTTCTCTACCCAGACAGCGTGGTTGGAACTGATTCACATA
CAACTATGATTGATGGTTTGGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCTGAGGCAAC
AATGCTTGGCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.46272773
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020