Plant Circular RNA Database

Detail information of AT5G57160_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G57160_circ_g.1
					
						ID in PlantcircBase
						ath_circ_044520
					
						Alias
						At_ciR396, Ath_circ_FC3837, AT5G57160_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 23157629-23159628  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2
					
						Parent gene
						
							AT5G57160						
					
						Parent gene annotation
						
							DNA ligase 4
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G57160_circ_g.2 AT5G57160_circ_g.3 AT5G57160_circ_g.4 						
					
						Support reads
						7/30
					
						Tissues
						leaf/root, leaf, aerial, inflorescences, whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G57160.2:9
AT5G57160.1:9

General Information
CircRNA Name	AT5G57160_circ_g.1
ID in PlantcircBase	ath_circ_044520
Alias	At_ciR396, Ath_circ_FC3837, AT5G57160_C1
Organism	Arabidpsis thaliana
Position	chr5: 23157629-23159628 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene	AT5G57160
Parent gene annotation	DNA ligase 4
Parent gene strand	-
Alternative splicing	AT5G57160_circ_g.2 AT5G57160_circ_g.3 AT5G57160_circ_g.4
Support reads	7/30
Tissues	leaf/root, leaf, aerial, inflorescences, whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G57160.2:9 AT5G57160.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTAAAGGTTTGACCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGC
TAGTATCGCCAACATAAAGAACATCAAAGGCAACATaaaatatcatatttgagaagattgaggt
cttgcccttgatatccgatacatcagtttgaataaactgagagggaacaagagagacattcttt
ttctctcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 217
Transcript exons: 23157629-23157795,23159579-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGCTGGTGGATGACGCTAGTATCGCCA
ACATAAAGAACATCAAAGGCAACAT
Transcript length: 220
Transcript exons: 23157629-23157761,23159542-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCG
CCAACATAAAGAACATCAAAGGCAACAT
Transcript length: 242
Transcript exons: 23157629-23157682,23157685-23157785,23159542-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTGAATAAACT
GAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGATT
GTCCTGTGTGCTTTCAGACTCCTTCTGCCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACT
CTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAACAT
Transcript length: 254
Transcript exons: 23157629-23157774,23159521-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTCATGCCG
TTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAACAT
Transcript length: 259
Transcript exons: 23157629-23157777,23159519-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTCA
TGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAA
CAT
Transcript length: 260
Transcript exons: 23157629-23157777,23159518-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACCGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTC
ATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCA
ACAT
Transcript length: 272
Transcript exons: 23157629-23157793,23159522-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGCCGACCTTTTAAAGGTTTGACCACTTT
CTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGA
ACATCAAAGGCAACAT
Transcript length: 279
Transcript exons: 23157629-23157820,23159542-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT
CCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAAC
ATAAAGAACATCAAAGGCAACAT
Transcript length: 969
Transcript exons: 23157629-23157829,23157935-23158022,23158152-23158200,23
158307-23158402,23158534-23158617,23158799-23158892,2315
8983-23159107,23159308-23159383,23159473-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT
CCACAAAAGCCTGCACATCAAGACATTCATGCCAAGGCTTGTCATATCTTACTTTATCAATACG
AGGAAACCTCAGACTGTAAGGTGCAACAAACACCTCAGACCTTATCGTCCTGATATCACTAGTG
ATTGAAAGTATTATTGATTTTTCCGGGCTGTCAATCCAAACATCCGGTCTCTCTTTGGAGTGAT
TAGTGACCTGATAGAAGCTTGGTGGAGCCTTCTTTGGGTGCTCATTTTTTCTGAAATAAGGCTT
CAGTTTGCTTACAACAGTGTTAAGCTCATCATCAGAAAGCCCAGTGCCAACTCTACAAAAGGAC
ATAAATCGCCTGGGATATACATTTGCCTCTGCCCGGTCAGCCAAGGCTACAAGAAACTGTGCTA
CCTCTCCTCCACGACGTCCGGAGCCATAGTATCCTCCTATTATAAGAACATCCAGGTCAGCACC
AGCCCGGATATATTCAGGCTTCAATTTCATCCACTTGCCACTACGATCTCCAGGTTCCCATTTT
GATTCCAGGTCTTTAAGCACAATTCCTTCATCTCTGTTTTCAACTGTTTCTTTGAAAAATCGCT
CAACATCAGCAGCAGCATGAACAACAATAGACCAACTAGGTTCCCCTGAAGGGCGGTGAACATT
GAGACCACCTTCAGGTACTAAAACTTCGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGC
AGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAA
AGGCAACAT
Transcript length: 433
Transcript exons: 23157629-23159628
AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT
CCACAAAAGCTGTTTTCAACTGTTTCTTTGAAAAATCGCTCAACATCAGCAGCAGCATGAACAA
CAATAGACCAACTAGGTTCCCCTGAAGGGCGGTGAACATTGAGACCACCTTCAGGTACTAAAAC
TTCGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTC
TGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAACAT
						
					

						Genomic sequence
						
							AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA
CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA
TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT
CCACAAAAGCTGCAAAGTCAACATCAGTCGGACATATAAAGTGAAAGCAAATCGGTTATTTCAA
CTTTCATGAAAATGGGAACATTGGAGAATTTCTTTAGTTCTTTTACTCACCCTGCACATCAAGA
CATTCATGCCAAGGCTTGTCATATCTTACTTTATCAATACGAGGAAACCTCAGACTGTAAGGTG
CAACAAACACCTGAAAAGAGCAGAGTTTTACATAAAATAGAGCATATGCATTTTAAGCGACAAA
TCTGCATTGCAAGAATTAAATTAAGAAATGTAAGAGTTAACTGGCTAATCTTCACATCACATCT
TATAGACATACCTCAGACCTTATCGTCCTGATATCACTAGTGATTGAAAGTATTATTGATCTGC
AAAAAAAGGAAGAGAAAAGATATGAGCGCGAATAATAGTATTCAGTGATCCCAATTCTTCTGCT
TCAGATGAGCAAAAGGAGGTAATTGACAGAAAACTGACTTTTCCGGGCTGTCAATCCAAACATC
CGGTCTCTCTTTGGAGTGATTAGTGACCTGATAGAAGCTTGGTGGAGCCTTCTTTGGGTGCTCA
TTTTTTCTGAAAGACAAGTAAAATGAAAAAAGAGGCAGTGTTCTCATTCTTAGAATATCATACC
ACAAAAACATATTATTTTATATTTCTTTTGTTTTAATGAGATGAGAAAGCAAGTAAATGATTAC
GTCTTTCACCTGAAATAAGGCTTCAGTTTGCTTACAACAGTGTTAAGCTCATCATCAGAAAGCC
CAGTGCCAACTCTACAAAAGGACATAAATCTGCAAAAAAGAGAATAGCTTATCATTGATAATTA
GATTTGGAATGTCTAGGCAAACAACTAACAATTCCGATAACATGAAAAGCCCTAAGGTCTTCAT
GGCGCATGTTCTCTCATGGCTGTTTCTACTGACAATCTGATTTCATCTTATACGAGAAATGTGA
AACCATATAAATACTTACCGCCTGGGATATACATTTGCCTCTGCCCGGTCAGCCAAGGCTACAA
GAAACTGTGCTACCTCTCCTCCACGACGTCCGGAGCCATAGTATCCTCCTGGCAAAGATGTAAA
ATTCCCAATAAGATCCAATGGAAATGACCTTCATCTTTAAACAAGTAAAAGTAAACATAATATT
AAGTACAGACCTATTATAAGAACATCCAGGTCAGCACCAGCCCGGATATATTCAGGCTTCAATT
TCATCCACTTGCCACTACGATCTCCAGGTTCCCATTTTGATTCCAGGTCTTTAAGCACAATTCC
TTCATCTCTGAGGACAAAGAAGAAGGATTGGAAATAAGAACGCGCATCTGTGAAGAAAACCATA
TAATGTCTCTGTACTAGAGGTTAGATTCTGTCAAGCAAGTATCACTGTTCACACGAGGCCAAGA
AGGCACCATCCAAACGTTTTGCACAAATCATGAATAGTGGATAGAGAAACTTTGGCTGCATTAA
GAATTAAAAAGAAACCTGTTTTCAACTGTTTCTTTGAAAAATCGCTCAACATCAGCAGCAGCAT
GAACAACAATAGACCAACTAGGTTCCCCTGCAAAAGGATTGTTCACGTATCCATTGATTTAACT
CTGTCGCACTTGTGAACCTCGCACAGTCAACTAGAATCTTAGTAGTCCTTACCTGAAGGGCGGT
GAACATTGAGACCACCTTCAGGTACTAAAACTTCGAGCCGACCTTTTAAAGGTTTGACCACTTT
CTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGA
ACATCAAAGGCAACAT
						
					

			
		

Sequences
Splice junction sequence	TTTAAAGGTTTGACCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGC TAGTATCGCCAACATAAAGAACATCAAAGGCAACATaaaatatcatatttgagaagattgaggt cttgcccttgatatccgatacatcagtttgaataaactgagagggaacaagagagacattcttt ttctctcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 217 Transcript exons: 23157629-23157795,23159579-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGCTGGTGGATGACGCTAGTATCGCCA ACATAAAGAACATCAAAGGCAACAT Transcript length: 220 Transcript exons: 23157629-23157761,23159542-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCG CCAACATAAAGAACATCAAAGGCAACAT Transcript length: 242 Transcript exons: 23157629-23157682,23157685-23157785,23159542-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTGAATAAACT GAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGATT GTCCTGTGTGCTTTCAGACTCCTTCTGCCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACT CTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAACAT Transcript length: 254 Transcript exons: 23157629-23157774,23159521-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTCATGCCG TTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAACAT Transcript length: 259 Transcript exons: 23157629-23157777,23159519-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTCA TGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAA CAT Transcript length: 260 Transcript exons: 23157629-23157777,23159518-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACCGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTC ATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCA ACAT Transcript length: 272 Transcript exons: 23157629-23157793,23159522-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGCCGACCTTTTAAAGGTTTGACCACTTT CTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGA ACATCAAAGGCAACAT Transcript length: 279 Transcript exons: 23157629-23157820,23159542-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT CCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAAC ATAAAGAACATCAAAGGCAACAT Transcript length: 969 Transcript exons: 23157629-23157829,23157935-23158022,23158152-23158200,23 158307-23158402,23158534-23158617,23158799-23158892,2315 8983-23159107,23159308-23159383,23159473-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT CCACAAAAGCCTGCACATCAAGACATTCATGCCAAGGCTTGTCATATCTTACTTTATCAATACG AGGAAACCTCAGACTGTAAGGTGCAACAAACACCTCAGACCTTATCGTCCTGATATCACTAGTG ATTGAAAGTATTATTGATTTTTCCGGGCTGTCAATCCAAACATCCGGTCTCTCTTTGGAGTGAT TAGTGACCTGATAGAAGCTTGGTGGAGCCTTCTTTGGGTGCTCATTTTTTCTGAAATAAGGCTT CAGTTTGCTTACAACAGTGTTAAGCTCATCATCAGAAAGCCCAGTGCCAACTCTACAAAAGGAC ATAAATCGCCTGGGATATACATTTGCCTCTGCCCGGTCAGCCAAGGCTACAAGAAACTGTGCTA CCTCTCCTCCACGACGTCCGGAGCCATAGTATCCTCCTATTATAAGAACATCCAGGTCAGCACC AGCCCGGATATATTCAGGCTTCAATTTCATCCACTTGCCACTACGATCTCCAGGTTCCCATTTT GATTCCAGGTCTTTAAGCACAATTCCTTCATCTCTGTTTTCAACTGTTTCTTTGAAAAATCGCT CAACATCAGCAGCAGCATGAACAACAATAGACCAACTAGGTTCCCCTGAAGGGCGGTGAACATT GAGACCACCTTCAGGTACTAAAACTTCGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGC AGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAA AGGCAACAT Transcript length: 433 Transcript exons: 23157629-23159628 AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT CCACAAAAGCTGTTTTCAACTGTTTCTTTGAAAAATCGCTCAACATCAGCAGCAGCATGAACAA CAATAGACCAACTAGGTTCCCCTGAAGGGCGGTGAACATTGAGACCACCTTCAGGTACTAAAAC TTCGAGCCGACCTTTTAAAGGTTTGACCACTTTCTTCAGCAGTTCATGCCGTTCCTTCAAACTC TGGTGGATGACGCTAGTATCGCCAACATAAAGAACATCAAAGGCAACAT
Genomic sequence	AAAATATCATATTTGAGAAGATTGAGGTCTTGCCCTTGATATCCGATACATCAGTTTGAATAAA CTGAGAGGGAACAAGAGAGACATTCTTTTTCTCTCCTCTCTTGGAGGATTTATTGACTTTCGGA TTGTCCTGTGTGCTTTCAGACTCCTTCTGTTTCTGTGTGGTGCCGTTACTCGAATTCACCAATT CCACAAAAGCTGCAAAGTCAACATCAGTCGGACATATAAAGTGAAAGCAAATCGGTTATTTCAA CTTTCATGAAAATGGGAACATTGGAGAATTTCTTTAGTTCTTTTACTCACCCTGCACATCAAGA CATTCATGCCAAGGCTTGTCATATCTTACTTTATCAATACGAGGAAACCTCAGACTGTAAGGTG CAACAAACACCTGAAAAGAGCAGAGTTTTACATAAAATAGAGCATATGCATTTTAAGCGACAAA TCTGCATTGCAAGAATTAAATTAAGAAATGTAAGAGTTAACTGGCTAATCTTCACATCACATCT TATAGACATACCTCAGACCTTATCGTCCTGATATCACTAGTGATTGAAAGTATTATTGATCTGC AAAAAAAGGAAGAGAAAAGATATGAGCGCGAATAATAGTATTCAGTGATCCCAATTCTTCTGCT TCAGATGAGCAAAAGGAGGTAATTGACAGAAAACTGACTTTTCCGGGCTGTCAATCCAAACATC CGGTCTCTCTTTGGAGTGATTAGTGACCTGATAGAAGCTTGGTGGAGCCTTCTTTGGGTGCTCA TTTTTTCTGAAAGACAAGTAAAATGAAAAAAGAGGCAGTGTTCTCATTCTTAGAATATCATACC ACAAAAACATATTATTTTATATTTCTTTTGTTTTAATGAGATGAGAAAGCAAGTAAATGATTAC GTCTTTCACCTGAAATAAGGCTTCAGTTTGCTTACAACAGTGTTAAGCTCATCATCAGAAAGCC CAGTGCCAACTCTACAAAAGGACATAAATCTGCAAAAAAGAGAATAGCTTATCATTGATAATTA GATTTGGAATGTCTAGGCAAACAACTAACAATTCCGATAACATGAAAAGCCCTAAGGTCTTCAT GGCGCATGTTCTCTCATGGCTGTTTCTACTGACAATCTGATTTCATCTTATACGAGAAATGTGA AACCATATAAATACTTACCGCCTGGGATATACATTTGCCTCTGCCCGGTCAGCCAAGGCTACAA GAAACTGTGCTACCTCTCCTCCACGACGTCCGGAGCCATAGTATCCTCCTGGCAAAGATGTAAA ATTCCCAATAAGATCCAATGGAAATGACCTTCATCTTTAAACAAGTAAAAGTAAACATAATATT AAGTACAGACCTATTATAAGAACATCCAGGTCAGCACCAGCCCGGATATATTCAGGCTTCAATT TCATCCACTTGCCACTACGATCTCCAGGTTCCCATTTTGATTCCAGGTCTTTAAGCACAATTCC TTCATCTCTGAGGACAAAGAAGAAGGATTGGAAATAAGAACGCGCATCTGTGAAGAAAACCATA TAATGTCTCTGTACTAGAGGTTAGATTCTGTCAAGCAAGTATCACTGTTCACACGAGGCCAAGA AGGCACCATCCAAACGTTTTGCACAAATCATGAATAGTGGATAGAGAAACTTTGGCTGCATTAA GAATTAAAAAGAAACCTGTTTTCAACTGTTTCTTTGAAAAATCGCTCAACATCAGCAGCAGCAT GAACAACAATAGACCAACTAGGTTCCCCTGCAAAAGGATTGTTCACGTATCCATTGATTTAACT CTGTCGCACTTGTGAACCTCGCACAGTCAACTAGAATCTTAGTAGTCCTTACCTGAAGGGCGGT GAACATTGAGACCACCTTCAGGTACTAAAACTTCGAGCCGACCTTTTAAAGGTTTGACCACTTT CTTCAGCAGTTCATGCCGTTCCTTCAAACTCTGGTGGATGACGCTAGTATCGCCAACATAAAGA ACATCAAAGGCAACAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.725684995

Conservation Information
Conserved circRNAs	NA
PMCS	0.725684995

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23159041-23157631(-)
						
						Potential amino acid sequence
						
							MKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSD
DELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEV
FVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVNKSSKRGE
KKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYVAFDVLYVGDTSVIHQSLKERHELLKKVVKPL
KGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPGDRS
GKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTG
LSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIR
SEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVNKSSK
RGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYVAFDVLYVGDTSVIHQSLKERHELLKKVV
KPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPG
DRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRV
GTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIR
TIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVNK
SSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYVAFDVLYVGDTSVIHQSLKERHELLK
KVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKW
EPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSF
CRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITS
DIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPK
VNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIF(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress; regulation of development and senescence of leaves

Functional Information
Coding potential	Y
Potential coding position	23159041-23157631(-)
Potential amino acid sequence	MKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSD DELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEV FVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVNKSSKRGE KKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYVAFDVLYVGDTSVIHQSLKERHELLKKVVKPL KGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPGDRS GKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTG LSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIR SEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVNKSSK RGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYVAFDVLYVGDTSVIHQSLKERHELLKKVV KPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPG DRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRV GTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIR TIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVNK SSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYVAFDVLYVGDTSVIHQSLKERHELLK KVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKW EPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSF CRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITS DIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPK VNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIF(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress; regulation of development and senescence of leaves

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019

circRNA

Detail information of AT5G57160_circ_g.1

Address

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