Detail information of Zm00001d008706_circ_g.4


General Information
CircRNA Name Zm00001d008706_circ_g.4
ID in PlantcircBase zma_circ_005631
Alias cold_test_circ_000754
Organism Zea mays
Position chr8: 17462427-17462478  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d008706
Parent gene annotation Photosystem I reaction center subunit XI chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d008706_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCTTCGGCGGCATCTCCGGCGTGcggctgggccaagttcaccggggggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGCTGGGCCAAGTTCACCGGGGGGTTCTTCTTCGGCGGCATCTCCGGCGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.790062821
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018