Detail information of BGIOSGA014801_circ_igg.1


General Information
CircRNA Name BGIOSGA014801_circ_igg.1
ID in PlantcircBase osi_circ_014518
Alias Chr04:25423139_25425436(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23416487-23418783  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATACTTCCTTCTCCTAATGATCGCCCTCGAGGCCATTTTTGGTTGCTTCTTCCTTTTCTCA
AGAGAATGTCAGGGTTATGCCTTTCCGGGTAGAACCcctgattttgcatctcctctgttgacaa
caaaccaagatggccacgttctcgacatgcttgtcgaagctcctcctcagaaagagactccacg
ccctcagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGATTTTGCATCTCCTCTGTTGACAACAAACCAAGATGGCCACGTTCTCGACATGCTTGTCG
AAGCTCCTCCTCAGAAAGAGACTCCACGCCCTCAGCCTGGATCATCTTATCATCATTCTTAATT
CTGCAAATAAAGATATAAAAGAGTTACTACGGTTAACTACCCAAAAAAATGTTTGCATAAGAAC
ATGACGCTGTTTTCAAACTTGAAAGAGGATTGATTTTGGTGTAACATTAACTGTTCCTCTGTGA
TTCATCATGGCGCCATTATTTTACAACCGTACACTAGAGAAGATTTTACTCTGGACACATTGTT
CTCAATTTCAGATGATGCAGTGAGAACTACAAAACCGCTCAAAAGTTAAATCTCTATTTGTCTT
TCTGGAAAATTTTCAATTGCCTGTCGATCTTCTAAGATGTAAAATGGCCAAAACAGTATTAGAT
GTGTCAAAAACAAAAACGTATACAATGTTGAAGATTAATTAGCACTCAAGTTGAATTGGAGATT
TGTAAAAGGATCATTCTACATCATCCACCATGTATTTTTTTCTCATCATCTAACTATCTGACAT
CTATATCTGCACACAGCATCTACATCAGAAAGCAACCGGTGGGCATACTCTTGCAATTTCTTCC
GAAGCATGAATGTCAGGTAGTGGTCTGTACCAAAAGGTTGGATCCCCATATATTTACACATATT
TACCAACCGTGCTCTGCAGGCAAAAAAGGACTGATCAGAAAGATGTGAAAACCAAGGGCTAGGG
CTAAGCTAGATGTTCAAGAAACATCAACCTGTTCATGTTATCCAAAGTCAGTTCATCATTAAAC
AGCTTTGCAAAGCTCAAAATTTCTTCATTTGAGACATGCCCACCTTTCCTAACCTAGTTACAAA
GTTAAGAATAGATTACTAGGAAATCAATAAAACAAACACTTAATGATCTATGTATTCAACTTGA
GGTAACAAACAAAACATGTATGAACCCAAAACCTTGTTCAAAAATTCATCCAGATCTTCAGCTG
TCTGTTTCATTTCTCCACTACGTGACGTCTGCACTTCCTTGCCATTTCTTTTGCAGTATCTTGT
AAAAATCTTGCATATTCCATCCTTGCTTTCAATTTCCTTTTCAATGCCTCCTGCACGTATCAAA
AAAAAAAAATGTTGACCTGAGTCAATCTGTTTGTATTTAGCAAATACAGTGGCAAGATATCATA
ACATGTCTTGGTCAGTACCTCTTCCTTCATCTTGTCCTGGAAAGTCGATGGCAACATGTTAGGG
AACATCTTGAGGAAGACTGGTAGTAAAAATTCCATGAAGGGAACAATGATGAACACAGCAAAAG
GTACAAGCCTAAACAAATCAGCTGTTGTGCGTGTAAGCTGTTGCCTCTCTCTTCTTGTTAGGCT
CTTTCCACCAGCAAGTTTCACTAACAATCTAGATGAAATCCTAACATCTGCCCACAGCAGCTTA
GTTCCCAACCAATAATGCTGCAGTGTAGAAACAAACTCATCCTTCCAATGCTTCAATTTTGCAG
CCCAGTCAGCCCTTCGATTCACAAGATAAATATAAATCAAAACATTGGATATGAATGTATAATC
CATGGAAAGGGGCAAGACAGCAATTGCAAATATACTTCAATATACTGAAGGGAACTGAGACCTG
CTCATTGAAGCAACAGCACGCAGAGCAGGTCCAATACCTAGAAGTATTGCCCAAAATTTATGTA
TGATTGACTGGTCAGACTTTTGTACTTCCTGCACCAGCTTAGCTTTAGCTTTAGCTTTTGCAGT
GCTTAAGCCTTCCACCGCCTGATCACACTCTTCTGGGGATGCCTCCTTTTTCCCCTGATTCTGG
TTCTGGTTCTCACTCCGCTCGTCCAGAATACCAACTTTAGGCTGCCCAGCAGTGCTTGATGTTG
GGCGTACTGACTGTAGGAAATACCTGGCTCCCAAGGGGAAACCAAAAGTCTGTGGTTTAGATTC
ATAAGAAGCAAGTGAAGCACCACGAGTTGGGTGACACAGGATACTAAGGCCCAAAAGTCCTTGT
TTCCTTAAGATGTATTGTGCCTTCTCATGGTTTGATTCTCTTGAGTTTTGAGATGCAGTGCTTT
GCTCAATTTCACATCCAAACTTTTCTTGCCCAAAAGTAGAAATAGATGAATGTCGTAATAAAAC
AGGGATATTAGTATGCTCCAGAGCATACTTCCTTCTCCTAATGATCGCCCTCGAGGCCATTTTT
GGTTGCTTCTTCCTTTTCTCAAGAGAATGTCAGGGTTATGCCTTTCCGGGTAGAACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2932
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021