Detail information of Pg_S2386.3_circ_g.1


General Information
CircRNA Name Pg_S2386.3_circ_g.1
ID in PlantcircBase pgi_circ_000188
Alias novel_circ_0000504
Organism Panax ginseng
Position chrPg_scaffold2386: 119040-120819  JBrowse»
Reference genome ginseng_v1
Type   i-circRNA
Identification method find_circ, CIRI
Parent gene Pg_S2386.3
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTTTTTTAAAATAAAGCAGAAAGAAGAATTTCAGCATACAGCGTATTCAACAAATGCTTATG
TGACGGTAGGACCACTTGCAAATCAAGTATTGCAAGggtcctgagctaaagaaagatgaattag
agcaacttgtgattcagcttatactagaccgtgtattggtaagcaacttgatcatctcatattg
gatcgact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCCTGAGCTAAAGAAAGATGAATTAGAGCAACTTGTGATTCAGCTTATACTAGACCGTGTAT
TGGTAAGCAACTTGATCATCTCATATTGGATCGACTGCATATTCTTGTAATACTTAATCATGTT
AGCAATAACTGCATATTCTAAAACTTAAGAATACAAGTTCATAGTATCCTAATTGCCAGTGGAA
GACAGCTACATTATTGCTAGGATACAAAATTTGCGTACCTTTACTGTGCATTTACTATTTATAT
TTCAATACAAAATGAATTCATGTTTTTCTGTTAGTTATTCATGGATCAGGTGGTTAAATGAGTT
GCATACCCAGACTAGGAAAACGTACTGTTAGTCTGAAGAACTTTAGTTACCCCTTATATTTCTG
AAAAATATTACTTAAATACACTTTAAACCTTAAAGTTTTTCACCTTTTACGCTTCAAACCTTAA
TGTTTTTAACTTTAAGACATTAAACATTAATATCTCTATATTTCTATAGAAGAAAACCTTTTGG
CTACCAAATTGAACATTTTTTTACTAGAATAAGTCACGTGACTCAAAATAAAAGGGTAACTAAG
TCTTTTAAGGGCATATATCGTCTCCTTGTTTTTCTTTTTTATCACACACTAATCATGTGAGTAC
AATGTTTTGTGCTTCCAAATATAGGGTAAAATGTAAAGTCGACCACTGAACTTTAATGGTTTTT
GGGTATGGAGCCCTTTTTTTTTTGTCAACGCAAATTGAGCCCATTTCTATTAAAAAATTTGGAC
TTCGGATCGATCTCGAATGAGATTTGAATGTGGCGCCTGGGGCTCGAAGTCCAAATTTTTTAAT
AGAAAGGGGCTCAATTTGTGTTGACCAAAAGAAAATGGCTCAATACCCAAAAATCACTAAAGTT
CAGTGGTCGACTTTGCATTTTACCCTCCAAATATATATAAGATGTTCAATCAATCTAGAAAATT
AAGTTTTTTAAGGGTATATATTGTTTCTATTGACTTTATTTTTTTTCTTCATCACACACTAATC
ACGTGCGTATATTTTTCTGTGTTTTCAAATATATTTTGGATTGAAATTATCCAAAATACCTCTA
ATTCGGATCAATTATTACTCATCGGCGGCCAAAAGGTTCAATTTATAGTGATTTAAAGACATTA
AGGTTCAATGTCTTTAAGTTAAAACATTGGGGTTTAAGTTGTAAAAAGTAAAAAATTTAAAGTT
TTAAAGTGTATTTAAGCCGATAAAGATTGATTTTTTTTAATGATGGGTAACACGTTCAAGCCAT
TAAAGACAGAAGATCGACTCAAGAACAAATTACATTATGAGCTCCATTGGTAGCTCTTAATTCA
GAAAATGCTAGTGTGCTAAGCCAAAACTAATATTGCATATACCTTGTTTTCAACTATTTTGTTT
AAGATCCAAATATTCTCTCTGTTTTTCCCTATTTACCTCAACAACAAAATCAAGTACAAGACAA
AATGGTGGTACATATGGGAAACTGCCAAGTCTGTAAAAACTATGAAGCATTTCAATAGGTTGTG
GTTCTTCTTTTAAGCAACCAAACTTCACTTCCCAGGCATGTACTCCAGTTATTCTTTTAATAGA
GAATATTTAACATATAATTTCTGTCTTTGCTCTTTTTTGACTCGTTAGATGCACCCATAATTAT
TTTGCTTCCTCACTTATATTTTTTTAAAATAAAGCAGAAAGAAGAATTTCAGCATACAGCGTAT
TCAACAAATGCTTATGTGACGGTAGGACCACTTGCAAATCAAGTATTGCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Bian et al., 2021