Detail information of BGIOSGA003623_circ_ig.1


General Information
CircRNA Name BGIOSGA003623_circ_ig.1
ID in PlantcircBase osi_circ_002109
Alias 1:20003969|20004302
Organism Oryza sativa ssp. indica
Position chr1: 20003969-20004302  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001542_circ_ig.1 BGIOSGA003623_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGTATAGATATTGAGCTTGCATATACAGGGACTAGGAGGATTCTACATTATAGGGAACCAT
CTTTGCCAGGTGTTCAACAAGTTTAGTGATAGGACCttccaacagtgggaatacttacagagga
gaatagagaagtgatgccttgtactagaattgtcaaacaataatagccggcaacgatttaagtg
taaacttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCCAACAGTGGGAATACTTACAGAGGAGAATAGAGAAGTGATGCCTTGTACTAGAATTGTCAA
ACAATAATAGCCGGCAACGATTTAAGTGTAAACTTCTTAATAGTCATGGCATTTCAGCTACAGT
AGGGAATATTTAGACACAGGCATTGGCTATTTAATTATCTTTTGGCCTTGATTTGGCATATTGA
TGAGAATTCTTTATTTTGTTTTATGGTGGCACTCTTGAATCATTATGTATAGATATTGAGCTTG
CATATACAGGGACTAGGAGGATTCTACATTATAGGGAACCATCTTTGCCAGGTGTTCAACAAGT
TTAGTGATAGGACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021