Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0169100_circ_g.3 |
ID in PlantcircBase | osa_circ_008589 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 3334884-3335393 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0169100 |
Parent gene annotation |
Sec1-like protein family protein. (Os11t0169100-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0169100-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.305550408 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3335194-3335390(+) 3334949-3335313(-) |
Potential amino acid sequence |
MIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTAQFLYHL ASKVGHSAYVDSPFGPDAFREYETLLTQDHEELLKKYEKSDEHKDTTFYTGKDFTSDGGRYSNW ESGVHYGSNSESSPTKKDLFADESSQLETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAES CLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTAQFLYHLASKVGHSAYVDSPFGPDAFREY ETLLTQDHEELLKKYEKSDEHKDTTFYTGKDFTSDGGRYSNWESGVHYGSNSESSPTKKDLFAD ESSQLETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPISTGRS FDGDEIPPGVTLTAQFLYHLASKVGHSAYVDSPFGPDAFREYETLLTQDHEELLKKYEKSDEHK DTTFYTGKDFTSDGGRYSNWESGVHYGSNSESSPTKKDLFADESSQLETKGKRLSVTVTHFPMI FSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTAQFLYHLAS K(+) MSHTPGRHLVQMGNQHMLSDQPYWPDGKGTGQSMSLRGESHHHQKIYQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |