Detail information of Zm00001d002654_circ_g.3


General Information
CircRNA Name Zm00001d002654_circ_g.3
ID in PlantcircBase zma_circ_000998
Alias circ2347
Organism Zea mays
Position chr2: 18318809-18319133  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d002654
Parent gene annotation naked endosperm1
Parent gene strand -
Alternative splicing Zm00001d002654_circ_g.1 Zm00001d002654_circ_g.2
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d002654_T002:1
Zm00001d002654_T018:2
Zm00001d002654_T008:1
Zm00001d002654_T007:1
Zm00001d002654_T013:1
Zm00001d002654_T020:2
Zm00001d002654_T001:1
Zm00001d002654_T014:1
Zm00001d002654_T019:2
Zm00001d002654_T021:2
Zm00001d002654_T003:1
Zm00001d002654_T015:1
Zm00001d002654_T004:1
Zm00001d002654_T022:1
Zm00001d002654_T010:2
Zm00001d002654_T023:1
Zm00001d002654_T026:2
Zm00001d002654_T025:2
Zm00001d002654_T009:1
Zm00001d002654_T011:2
Zm00001d002654_T006:1
Zm00001d002654_T016:1
Zm00001d002654_T005:1
Zm00001d002654_T012:2
Zm00001d002654_T024:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCGAACGCGCCAACACTGCTTCTCCTTCCTGCAGCTGGTCGCTTTGGCCCGTTGCTAGGAAT
AGGGTCGGCAGTGTTCTTCGTCCTTCCCCTTCTTCGccaggcatagtcctcttcttcttgggcg
gtggctgcgccggcggcgcgccttggccggacgccgcaggaacaccgcctgccacaccgggcag
cgccgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGCATAGTCCTCTTCTTCTTGGGCGGTGGCTGCGCCGGCGGCGCGCCTTGGCCGGACGCCG
CAGGAACACCGCCTGCCACACCGGGCAGCGCCGCTGCCAGCTGTTGCTGCGGTGATATCAGCGG
CTTAATCTGGTCTTGCTGGTCCCCATCCCTAACACCAAAGAACGCCGCCGATGAATTCGATGCC
ATCACTTCCTCCCGATTTATCCTGGCACCACCAGCTCGAACGCGCCAACACTGCTTCTCCTTCC
TGCAGCTGGTCGCTTTGGCCCGTTGCTAGGAATAGGGTCGGCAGTGTTCTTCGTCCTTCCCCTT
CTTCG
Conservation Information
Conserved circRNAs NA
PMCS 0.208479385
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b