Plant Circular RNA Database

Detail information of 3_circ_ag.24

			
						 General Information
					
						CircRNA Name
						3_circ_ag.24
					
						ID in PlantcircBase
						ath_circ_021735
					
						Alias
						At_ciR156
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 4820191-4823247  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT3G14415_circ_g.1 AT3G14415_circ_g.2 AT3G14415_circ_g.3 AT3G14415_circ_g.4 AT3G14415_circ_g.5 3_circ_ag.6 AT3G14415_circ_g.7 3_circ_ag.8 AT3G14415_circ_g.9 3_circ_ag.10 AT3G14415_circ_g.11 3_circ_ag.12 AT3G14415_circ_g.13 AT3G14415_circ_g.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 AT3G14415_circ_g.18 AT3G14415_circ_g.19 AT3G14415_circ_g.20 AT3G14415_circ_g.21 3_circ_ag.22 AT3G14415_circ_g.23 3_circ_ag.25 3_circ_ag.26 AT3G14415_circ_g.27 3_circ_igg.28 AT3G14420_circ_g.1 AT3G14420_circ_g.2 AT3G14420_circ_g.3 AT3G14420_circ_g.4 AT3G14420_circ_g.5 AT3G14420_circ_g.6 AT3G14420_circ_g.7 AT3G14420_circ_g.8 AT3G14420_circ_g.9 AT3G14420_circ_g.10 AT3G14420_circ_g.11 AT3G14420_circ_g.12 AT3G14420_circ_g.13 AT3G14420_circ_g.14 AT3G14420_circ_g.15 						
					
						Support reads
						25/73
					
						Tissues
						leaf/aerial, inflorescences
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	3_circ_ag.24
ID in PlantcircBase	ath_circ_021735
Alias	At_ciR156
Organism	Arabidpsis thaliana
Position	chr3: 4820191-4823247 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	CIRI, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT3G14415_circ_g.1 AT3G14415_circ_g.2 AT3G14415_circ_g.3 AT3G14415_circ_g.4 AT3G14415_circ_g.5 3_circ_ag.6 AT3G14415_circ_g.7 3_circ_ag.8 AT3G14415_circ_g.9 3_circ_ag.10 AT3G14415_circ_g.11 3_circ_ag.12 AT3G14415_circ_g.13 AT3G14415_circ_g.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 AT3G14415_circ_g.18 AT3G14415_circ_g.19 AT3G14415_circ_g.20 AT3G14415_circ_g.21 3_circ_ag.22 AT3G14415_circ_g.23 3_circ_ag.25 3_circ_ag.26 AT3G14415_circ_g.27 3_circ_igg.28 AT3G14420_circ_g.1 AT3G14420_circ_g.2 AT3G14420_circ_g.3 AT3G14420_circ_g.4 AT3G14420_circ_g.5 AT3G14420_circ_g.6 AT3G14420_circ_g.7 AT3G14420_circ_g.8 AT3G14420_circ_g.9 AT3G14420_circ_g.10 AT3G14420_circ_g.11 AT3G14420_circ_g.12 AT3G14420_circ_g.13 AT3G14420_circ_g.14 AT3G14420_circ_g.15
Support reads	25/73
Tissues	leaf/aerial, inflorescences
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACTCGTTGTCACTTCATTTTCACGAACAGGATGTCCAGTGGCTCCAGACAATCACCAAGTTGC
CCATTCTTGTCAAAGGTGTTCTTACAGGAGAGGATGcaaggatagcgattcaagctggagcagc
agggatcattgtgtcaaatcatggagctcgccagcttgattatgtcccagcaacaatctcagcc
cttgaaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAAGGATAGCGATTCAAGCTGGAGCAGCAGGGATCATTGTGTCAAATCATGGAGCTCGCCAGCT
TGATTATGTCCCAGCAACAATCTCAGCCCTTGAAGAGGTAGATCATTCTCGACTACAAACATAA
ATCTGTGTTCTCGATAAGTATTTATGTACAAGCACATTAGCTTTGTTCTCTTGTGTTCAGGTTG
TCAAAGCAACACAAGGACGAGTTCCTGTCTTCTTGGATGGTGGTGTTCGACGTGGCACTGATGT
CTTCAAGGCACTTGCACTTGGAGCCTCTGGAATATTTGTAAGCATCACATCATATATCCATTCA
CCAGAAAGTTGCTTAAAAACAGTAAATATTTAAAATGCCTTCTCAATCTCAGATTGGAAGACCA
GTGGTTTTTGCACTAGCTGCTGAAGGAGAAGCCGGAGTCAAAAAGGTGCTTCAAATGTTGCGTG
ATGAGTTCGAGCTAACCATGGCACTAAGTGGGTGCCGGTCACTCAGTGAAATCACCCGTAACCA
CATTGTCACGGAATGGGACACTCCACGCCATTTGCCCAGGTTATAGAGAAGAAAAAAAAAACAG
AGAACAGAAACAACACGGCACCAAAACGTATTCATATTCTGATTGATCACTTTGCTTCTACTCT
GCTATATTTATATCTCGAAAAACTTGTTTCTCCCTATATCGGATCACAAAAACGTGCGTAGAGA
TTCTCTGTAATGCTATTTGGCTACATTTTACCTTTCCGTTTATTCTTATTGCTTGTACAATAGA
TGTTGATTCCTACAATACCAATGAATACTAAAATCTGTTCCCGGAAAACTAGTATAGTCAGAAA
ATCTTACATTGCACCCAACTTCCACAATCCAAACACAGTTCAAATCTTATATTAACAGCAGCCA
AAACCTCACAGAAACTAGCTACCAAAAGAGCACAAAAGAATACTATAGGAGAACTCAGATTAAG
GAAAGACAGGTTTGTGAGATTTACAATACCTTATTGAAGAAGAATGTAAGCGAATTCATCCTTC
ACTTTGTGCTGGGCTAAGTATTGCATCGAAAAGCCCAAAATAATTTGGCTCACGAATTCGAAAC
TCTTGGATTTATGCACTTTTCTGAAAAAAAAAGAAAAACGATTGGTTTACGAATTACTACTATT
TTTCTACGAGATTAAGAACGATAATATGTAAGAAAAATCTAAGACACACACCATCCATCAGATT
TTTGTCCGTATCTCCTCATCAATTCTTCACCTCCAGCTTCTCATCCATATTTCTTTCTTTCCAA
TGCAAACAAGTTTTCAACTGTTAAAAGATAAACCAAAAACTCACAAGCCAATTAATCTATCAGA
AATATTTAACTTTTAACCAAATAAAAACGTTGAGATATATATAATATAAGCGTTCCTTACCACT
CACACACTTCATCTCTCCCCAGAGCTCTATTCCCATCAAGGTGTGTGAGATTCTCTGCTAAGAC
AAACCAAAAACCAGATTGTTTTGCGTTCATGGACATGTTCCTCTCTGGAGATTAGAATCGTAGC
TATGACTATGTCTGAATTTCACAAGAGGTAGCTAACTCAGGCCTTTTTGCTCTTTTGACAGAAA
CACACTTCGGAAGATGGAGATCACTAACGTTACCGAGTATGATGCAATCGCAAAGCAGAAGCTG
CCTAAGATGGTGTACGACTACTATGCATCTGGTGCAGAAGACCAATGGACTCTTCAAGAGAACA
GAAACGCTTTTGCAAGGATCCTGTGAGTTTTTCTTTTCTTTTCGTAAGACAAGAAATACTGTTT
GTTATTGGTTTTTACAATAGGTGTGATGCATACCTTGGGCTGTTTAATAGCTTTCGGCCTCGGA
TTCTGATTGATGTGAGCAAGATTGACATGACAACCACCGTCTTGGGGTTCAAGATCTCGATGCC
CATCATGGTTGCTCCAACTGCCATGCAAAAGATGGCTCACCCTGATGGTAAATACTGAGTTATG
TAGAGACTAGAGAGTGAAAACTTGTTTTAGTATCGCTAGAGACAAAGACTAAGGCTTGTTCTAA
CGACTCTGTTTGAAACTAATGTAGGGGAATATGCTACTGCTAGAGCTGCATCTGCAGCTGGAAC
TATCATGGTATGTTCTTATATCATTACGAAATATATCATATAGAGCAAGATTTCTTCTAACCTT
CTTGGTTTCCGGTGTTTGGAGCTTTTAAATCCGTGGCCCATGCATACCCATGTCTCTGGTTTAA
GTTATTTTCATCCATGATGTTTCAGACACTATCTTCATGGGCTACTTCCAGCGTTGAAGAAGTT
GCGTCTACAGGGCCAGGGATCCGATTCTTCCAGCTCTATGTAAGTTATCTCAAGAGCTTGTTGT
ACATCCTGAAAACCCCGGTCACACTTGATGGTTCTTATGTTATAATCTTTGAGTAGGTATACAA
GAACAGGAATGTGGTTGAGCAGCTCGTGAGAAGAGCTGAGAGGGCTGGGTTCAAAGCCATTGCT
CTCACTGTAGACACCCCAAGGCTAGGCCGCAGAGAGTCTGATATCAAGAACAGGTAAAGCCAAG
TCATTTGAAATATGACAAGAGTTTAATGGATTTTAATACGTAAACACAGCTAGAAAGTGTAACG
TTCTTCTACTACAGATTCACTTTGCCTCCAAACCTGACATTGAAGAACTTTGAAGGACTTGACC
TCGGAAAGATGGACGAGGCAAGCATCTATCAGATACTATCCAGTCCTATAATCTAAATATGATT
CTCACAAAGCAAGTCTTAAAGCACACTTGCTATGTTTACCTTTCCTGAGTGTTCCTGAGCTTGT
TCTGTTTTCACCTTTAGGCCAATGACTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCG
TACCTTAAGCTGGAAGGTAAACAGAGTAGTTTAACAGATAAACAACAAACCGAGAAGTTAGTAG
AAACTTGATTGTTGACTCGTTGTCACTTCATTTTCACGAACAGGATGTCCAGTGGCTCCAGACA
ATCACCAAGTTGCCCATTCTTGTCAAAGGTGTTCTTACAGGAGAGGATG
						
					

			
		

Sequences
Splice junction sequence	GACTCGTTGTCACTTCATTTTCACGAACAGGATGTCCAGTGGCTCCAGACAATCACCAAGTTGC CCATTCTTGTCAAAGGTGTTCTTACAGGAGAGGATGcaaggatagcgattcaagctggagcagc agggatcattgtgtcaaatcatggagctcgccagcttgattatgtcccagcaacaatctcagcc cttgaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAAGGATAGCGATTCAAGCTGGAGCAGCAGGGATCATTGTGTCAAATCATGGAGCTCGCCAGCT TGATTATGTCCCAGCAACAATCTCAGCCCTTGAAGAGGTAGATCATTCTCGACTACAAACATAA ATCTGTGTTCTCGATAAGTATTTATGTACAAGCACATTAGCTTTGTTCTCTTGTGTTCAGGTTG TCAAAGCAACACAAGGACGAGTTCCTGTCTTCTTGGATGGTGGTGTTCGACGTGGCACTGATGT CTTCAAGGCACTTGCACTTGGAGCCTCTGGAATATTTGTAAGCATCACATCATATATCCATTCA CCAGAAAGTTGCTTAAAAACAGTAAATATTTAAAATGCCTTCTCAATCTCAGATTGGAAGACCA GTGGTTTTTGCACTAGCTGCTGAAGGAGAAGCCGGAGTCAAAAAGGTGCTTCAAATGTTGCGTG ATGAGTTCGAGCTAACCATGGCACTAAGTGGGTGCCGGTCACTCAGTGAAATCACCCGTAACCA CATTGTCACGGAATGGGACACTCCACGCCATTTGCCCAGGTTATAGAGAAGAAAAAAAAAACAG AGAACAGAAACAACACGGCACCAAAACGTATTCATATTCTGATTGATCACTTTGCTTCTACTCT GCTATATTTATATCTCGAAAAACTTGTTTCTCCCTATATCGGATCACAAAAACGTGCGTAGAGA TTCTCTGTAATGCTATTTGGCTACATTTTACCTTTCCGTTTATTCTTATTGCTTGTACAATAGA TGTTGATTCCTACAATACCAATGAATACTAAAATCTGTTCCCGGAAAACTAGTATAGTCAGAAA ATCTTACATTGCACCCAACTTCCACAATCCAAACACAGTTCAAATCTTATATTAACAGCAGCCA AAACCTCACAGAAACTAGCTACCAAAAGAGCACAAAAGAATACTATAGGAGAACTCAGATTAAG GAAAGACAGGTTTGTGAGATTTACAATACCTTATTGAAGAAGAATGTAAGCGAATTCATCCTTC ACTTTGTGCTGGGCTAAGTATTGCATCGAAAAGCCCAAAATAATTTGGCTCACGAATTCGAAAC TCTTGGATTTATGCACTTTTCTGAAAAAAAAAGAAAAACGATTGGTTTACGAATTACTACTATT TTTCTACGAGATTAAGAACGATAATATGTAAGAAAAATCTAAGACACACACCATCCATCAGATT TTTGTCCGTATCTCCTCATCAATTCTTCACCTCCAGCTTCTCATCCATATTTCTTTCTTTCCAA TGCAAACAAGTTTTCAACTGTTAAAAGATAAACCAAAAACTCACAAGCCAATTAATCTATCAGA AATATTTAACTTTTAACCAAATAAAAACGTTGAGATATATATAATATAAGCGTTCCTTACCACT CACACACTTCATCTCTCCCCAGAGCTCTATTCCCATCAAGGTGTGTGAGATTCTCTGCTAAGAC AAACCAAAAACCAGATTGTTTTGCGTTCATGGACATGTTCCTCTCTGGAGATTAGAATCGTAGC TATGACTATGTCTGAATTTCACAAGAGGTAGCTAACTCAGGCCTTTTTGCTCTTTTGACAGAAA CACACTTCGGAAGATGGAGATCACTAACGTTACCGAGTATGATGCAATCGCAAAGCAGAAGCTG CCTAAGATGGTGTACGACTACTATGCATCTGGTGCAGAAGACCAATGGACTCTTCAAGAGAACA GAAACGCTTTTGCAAGGATCCTGTGAGTTTTTCTTTTCTTTTCGTAAGACAAGAAATACTGTTT GTTATTGGTTTTTACAATAGGTGTGATGCATACCTTGGGCTGTTTAATAGCTTTCGGCCTCGGA TTCTGATTGATGTGAGCAAGATTGACATGACAACCACCGTCTTGGGGTTCAAGATCTCGATGCC CATCATGGTTGCTCCAACTGCCATGCAAAAGATGGCTCACCCTGATGGTAAATACTGAGTTATG TAGAGACTAGAGAGTGAAAACTTGTTTTAGTATCGCTAGAGACAAAGACTAAGGCTTGTTCTAA CGACTCTGTTTGAAACTAATGTAGGGGAATATGCTACTGCTAGAGCTGCATCTGCAGCTGGAAC TATCATGGTATGTTCTTATATCATTACGAAATATATCATATAGAGCAAGATTTCTTCTAACCTT CTTGGTTTCCGGTGTTTGGAGCTTTTAAATCCGTGGCCCATGCATACCCATGTCTCTGGTTTAA GTTATTTTCATCCATGATGTTTCAGACACTATCTTCATGGGCTACTTCCAGCGTTGAAGAAGTT GCGTCTACAGGGCCAGGGATCCGATTCTTCCAGCTCTATGTAAGTTATCTCAAGAGCTTGTTGT ACATCCTGAAAACCCCGGTCACACTTGATGGTTCTTATGTTATAATCTTTGAGTAGGTATACAA GAACAGGAATGTGGTTGAGCAGCTCGTGAGAAGAGCTGAGAGGGCTGGGTTCAAAGCCATTGCT CTCACTGTAGACACCCCAAGGCTAGGCCGCAGAGAGTCTGATATCAAGAACAGGTAAAGCCAAG TCATTTGAAATATGACAAGAGTTTAATGGATTTTAATACGTAAACACAGCTAGAAAGTGTAACG TTCTTCTACTACAGATTCACTTTGCCTCCAAACCTGACATTGAAGAACTTTGAAGGACTTGACC TCGGAAAGATGGACGAGGCAAGCATCTATCAGATACTATCCAGTCCTATAATCTAAATATGATT CTCACAAAGCAAGTCTTAAAGCACACTTGCTATGTTTACCTTTCCTGAGTGTTCCTGAGCTTGT TCTGTTTTCACCTTTAGGCCAATGACTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCG TACCTTAAGCTGGAAGGTAAACAGAGTAGTTTAACAGATAAACAACAAACCGAGAAGTTAGTAG AAACTTGATTGTTGACTCGTTGTCACTTCATTTTCACGAACAGGATGTCCAGTGGCTCCAGACA ATCACCAAGTTGCCCATTCTTGTCAAAGGTGTTCTTACAGGAGAGGATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.725149576

Conservation Information
Conserved circRNAs	NA
PMCS	0.725149576

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of 3_circ_ag.24

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