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circRNA ID
Zm00001d023538_circ_g.2
Alias
zma_circ_006428, Zm10circ00010
Organism
Zea mays
Position
chr10: 9369583-9370120  JBrowse»
Reference genome
AGPv4.38
Type  
ue-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d023538
Parent gene annotation
Long chain acyl-CoA synthetase 9 chloroplastic
Parent gene strand
+
Alternative splicing
Splice junction sequence  
AGCTGGAAAGCTGGGCTTCGCAGCAAGGAATCAAATACAACGATTTCTCAGATTTGTGCCAGAA
GCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCaagctaaaacaaatgaagtctacaaggt
atggtgttctcctaccaatatattcatagattgtttcaggcattgaactttaacttcttcacac
tttctgta
Support reads
NA
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
AA-TG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
AAGCTAAAACAAATGAAGTCTACAAGGTATGGTGTTCTCCTACCAATATATTCATAGATTGTTT
CAGGCATTGAACTTTAACTTCTTCACACTTTCTGTAACAATAACCACACACCACATATATTATG
TGAAGGATGATGAGAAAGGTATGCGATGGTTCTATTCTGGAGACATCGGACGGTTCCATCCAGA
TGGCTGCCTTGAAATCATTGACCGTAAGAAAGATATCGTGAAGCTTCAACATGGCGAATATGTA
TCTCTCGGGAAGGTATGCAATATTCTTATTCTGGTCCAACTGGCTGAATTGCACTGCTTAACTT
GTTAGGTGATGACAGGTAGAGGCTGCTTTGATTGTGAGCCCATATGTGGAGAACATTATGATCC
ATGCTGATCCTTTCCACAATTACTGTGTTGCTCTCGTGGTGGCTGCACACATTGAGCTGGAAAG
CTGGGCTTCGCAGCAAGGAATCAAATACAACGATTTCTCAGATTTGTGCCAGAAGCAAGAGGCT
GTTAAAGAAGTGCTTGGATCTTTAGC
Number of exons covered
Zm00001d023538_T001:3
Zm00001d023538_T003:2
Zm00001d023538_T007:3
Zm00001d023538_T004:2
Zm00001d023538_T002:3
Zm00001d023538_T006:3
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
9370842-9369586(+)
Potential amino acid sequence
MIHADPFHNYCVALVVAAHIELESWASQQGIKYNDFSDLCQKQEAVKEVLGSLAS*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Han et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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