Detail information of BGIOSGA019220_circ_ig.1


General Information
CircRNA Name BGIOSGA019220_circ_ig.1
ID in PlantcircBase osi_circ_015930
Alias Chr05:3421664_3431256(MH63RS2), Chr05:3422211_3431688(MH63RS2), Chr05:3422567_3432521(MH63RS2), Chr05:3421664_3431256(MH63RS2), Chr05:3422211_3431688(MH63RS2), Chr05:3422567_3432521(MH63RS2), Chr05:3423097_3432730(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 3603524-3608445  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA019219_circ_ag.1 BGIOSGA019219_circ_ag.2 BGIOSGA019219_circ_ag.3 BGIOSGA019219_circ_igg.1 BGIOSGA019219_circ_ag.2 BGIOSGA019219_circ_igg.3 BGIOSGA019219_circ_ag.4 BGIOSGA019219_circ_ag.5 BGIOSGA019219_circ_ag.6 BGIOSGA019219_circ_ag.7 BGIOSGA019220_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAATAAGACGAGTAGTCAAACGTTGATTAAAAAATTCAACGGCGTCATATATTAAAATACGGA
GGGAGTACTATATAGTAGTAATAAATATAGTAGTAAgtagtagtgaacgaacgatcaaacgtcg
tgattgaaattcgaacggctgcttgtatatataagaaacgaaataaataaacaattggaatcaa
gatgttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGTAGTGAACGAACGATCAAACGTCGTGATTGAAATTCGAACGGCTGCTTGTATATATAAGA
AACGAAATAAATAAACAATTGGAATCAAGATGTTGGTACATGAATCGTAGGTCTAGGCATCAGT
AATACGGCCATGTATATCACCTGGAGCTAGTAGACATTTATTTATTTTCAGTTTGCCAAACACA
CAGTAGTACCGTGAGTTCTAAGATCACATCTAAAATTTATAAATTTTTTATCCATCGTTTAATT
GTTATATACTCCATCCGTCCATAAAAAATTAAACTCGTACACATCCAGTATTACGAATCTGGAT
ATATCTCTATTCAGATTTATTATACTAGAATATGTCACATCCCGTTCTAGATTTATTTTTTTTA
ACGGGAGGAGTAGTATTTTAAAATTTTGATATAATAATATGTTAAACTGGTTAATGGTGTGATT
TTATGAACTTTAGAACCACAATACCTATATAGCTACATGTCACGTACTAAAATCCCTATAATTT
TATACAACTTAGATAATAATAGGTGTGATTTTATAAAAATTGTTAAAAAAAATAAAAGGAATCC
GATATGAGTGGGACGAAGATATACGAGCTTGTTAACTTTGTTGATATTTATATCCTTACCATTT
TTTTTAATTATTACAAACCAAACATACTCTTACCAATACTACCTTACTAAATTAAATTAATAAT
CTAGAAGTTTCTAATCTTAAAAATTCTACTAAATTGTCAGGGTTACGAGTCAGGCATACCCTCT
ACCCCTCGATATACGTCACGTATCGACATGACATATCCACGTGTACACGAATAGATCTTTTGGC
ATCTAAGGAAACTCTTCGTGAAATCAATGGACGGGGAGAGACCTTCTCGGACAAGAATTGGGTT
ACCTACGTATCGTGTTAGGTCTGGTATGTTCGAGTCCTACTCGGAGAGCACCCAACCTGCGGTA
TAAAAGGGACCCCCCGGGGAGGGCATAGATCATCGAATCTCAGAGTCAACATAACCCACACAGC
CTATGAAGTCGGAGCCTGCAAGGAGCCAAGTCGACGAAAGCTAGTCGAATCATCTCGACTACAA
TCTCGCCGAATCCCCTGAGTTCCGTCTTTTCCTTTGTAATCTGTGTTTTCCACCATATAATCCC
ATATCAACTGGATTAGGGCTATTACCTATCAAGGGGCCTATACCAGTATAATTCTCGTCTTTTG
GTTGCTTGATGTCGTACTACGTAGATCCTTATACCAGCGTACCCCAATACCCTCTATATCCGGT
CTACGGGTATCCCCCGTCGACAGTGGCGCGCCAGGTAGGGGGACTTGGTATTCAAGGTTCTACT
ACTATGCCATCAAGCTTCGTCGACAACAACGCCAACACCAGCTCCGCTCAAGTTCTTCCTACCT
CAACAATGCTGGTATGGACTCAAGTCGGCGAAATCGTCTACCCGGTTTACACCACAATGCCGAT
CTCAACCGGTCCCCCAATGACTGGGAACGAGAACGCGGTGGCTACGAACCAAGACGCCTCCACG
TCGAAAAATCCACCCGTTGAAACGGAGAACGGATTACCGACTACATCCAAGTTCGTGAAGGATT
CTGATGCGGCCAGGCCTTGTCCCTCCGACACAAACCGCGGGCCAGCAAAGATGACTTCCGAAAC
TATCAGGTCTTGGTGTCCTATTCATAAAACCAAGAAACATACTCTTCAAGATTACTGGGTATTC
GTCAACGCTCATGCTGAAATCCGCGCCTGCAAAGAACGTGGGATCCAGCGTACTTCTCCAACTC
GGAACGTCTATTGTCCTATCCATAAGACAAAGAATCACGACCTCTCGAGTTGCAAAATTCTACT
CGGCGCCATGAAAACTCCGTCTCCTAAGTCATACGTCCCCATCCGGGATAACGGCAAGGAACAA
GGAGCGACTCCAGCCCCAGATCGGTTCGTTGGGGTAATCGATCTCAATCCCCATGAACCATCTG
TTTTACATCTCCTCGAAGACTATGGGTCATCAACGTCAGACGCGGCGCGGGAGGTGTTGGCTAT
CGATGACGTTGGCACGTCAGCACAAGCCAATGCGGTGGCGGCGAATCAATCGACTACCCCAGCC
CAACACATCAGGGCTGTTCAAGCCATACTGAGGGAAACACCTTACGATCCCGTTCTGAACAACG
ACCTCGAGCGTTGGACGGAACGAGTACGGGCATCGGTGACTAACCTCAGCAATGCGTTCGAAGA
AGCCGTCACCGCAGCACAACAAAACCGATCGCCAGTCGGCGACGCTAACGGTGAAAGTCCAGAA
CGGAGGGAATCACCTCGACAAGCTACCCCTCCACCTCATGGCACTGGCGATCTTCGAGATCAAA
TCAACGGACGCCGAGAAGCACGACGCACACGGGATGACGCGAACCACTCCCGGCGTCATGTCTC
CTCACGACGCCATGATCGAGGAAGTCGCCCAAACGAGAACCGAGACCATGACGATCGCGATCGG
CGAGGGCCAGACAACACTGGTCACGGCCGTCGCCGTAACGACGAAGATGAAGGAGATCAGCGTC
GAGACAACAACGAGAGACGAAGACAAGATTCCCGAGATCCAGGTCGTCACCCTCGTAATCGCAC
GCCGGAACCAAGCGACCCATCGTCATCATCGTCATCATCCGCGTCCTCTTCATTGTCAGACCGA
CATCCACGAAGGTCATGCGACCACCGACAACCCACCGCTCCAAGCGCTGGGTGTAGGGCTTTCG
GTCGTTCCCTACGTGATGTCCGATGGCCTGAGAGATTCCGACCTGGAGTTATTGAAAAGTATGA
TGGGAGCACCGACCCGGAAGAATTCCTTCAAGTCTACTCGACAGTGCTTTATGCCGCTGGAGTA
GATGCCAATGCGTTGGCAAACTATTTACCAACCGCGTTGAAGGGTTCTGCACGTTCGTGGCTGA
TGCATCTCCCCCCTACTTAATTTCTTCGTGGTCAGACCTGTGGCATCAGTTTGTCGCCAATTTC
CAAGGAACATACAAGCGCCACGCGATCGACGACGATCTTCACGCGTTAACACAGAGCTCAAGTG
AATCTTTGAGGGAATATGTTAGGCGCTTTAACGAGTGCAGGAACACCATCCCCGAGATCACTGA
CGCTTCTGTAATTCGCGCCTTCAAGTCTGGTGTCAGAGATCGCTACACTACCCAGGAGTTGGCA
ACAAGGCGCATCACAACTACTCGAAGATTATTCGAGATCGTTGAAAGATGTGCCCACGTCGATG
ACGCACTAAGACGCAAGAACGACAAACCGAAGACTGGGGGAGAGAAGAAGTCAGCCGCAGACAC
ATCTGAGTCGAGCAAGAAGAAAAATCGCAAAAACGGGAAAAGGAAAGCTCAAGCGGAAGTCCTC
GCAGCAGAATACGCGAACCCTCCCAAGCGCCCAGACCCACAAGGCAGCGACACAAAGAAATCAT
GGTGCCCCATACACAAAACAGATAGACATTCTCTGGAGGATTGCCTTGTTTTCAAAAAGTCGCT
CGAGAAGTACATGGCATTTGAAACTAAACACAATAATTAATACTATCAAAATTTGAATCTGCTA
AAATTTACTATCATTAAATTTGGTATCACCTACTACTCCGTCCTGGAAAAAATAAATTCTAGTT
ACGAACCTGGATACACGTGTCCAAATTCGTAGATAGGATTGGTCTTTTTTCTGGGACAGAGGGT
ATACATTTGACAGATGTAATTATAGTATAATTGTAAAATAATTACACTGTAATTTGCATGTAAC
TACAATGTAACTTGTATGTAATTTAAAAAAATCTCTCCGTAACATGCTATTTCGGTGAAATAGA
AGGTCGTGGGAACGAATCCTCTCATAAATACGTGCTCTGACTTTTTTCCTTCCTCACATGCACA
AATCTTGAAACAAAATCTAACGGATGAAAGTTATATACAAGTTACATTGTGCTACACTATGTAA
TGTAATTACATCTGTCAAATTTTTAAAAGAAAATTTACCGATAAATATATAGTAAAATTGTTAA
ATTTTGGTGTGGTTGAAAATCTATTATCTATTATAAAAATTAAATATGTTTCCGCGGTCCGTCA
TCCATGTTTGAGTCGCTTATAAAAATTGAAGATGTTTCCGTGGTTCGTTATCTGTGTTTGAGTC
GGTTTTAATTTTATGTTTTGGTTTTAATCTATATCTCTACGGTATTTGTGTATGGGTCGGTTTT
TAAGTTCGTTTGCTTTTGGTAATACATAAGGAATCATACTCATATAAGAAATCTGTTTAAAAAA
ACTCATATGCAAACTTAAGACGATCGGACTTCCTGTAGATCATGATTTTCTAAAAATATACTCC
CTTCGTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTTACCATTCGTCTTATTCAA
AAATTTTATGCAAATATATAACATATAAATCACACTTAAAATACTATGAGTAATAAAACAACTC
ATAACAAAATAAATTATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACATGTGAGAA
AAAGTCAAACATGTGAGAAAAAGTCAATGACGTCATCTATTAAAAAACGGAGGTAGTATATATC
CAAGCGAACGTACAGTACTCCAAATTTCATCCTAACTAAACTATATACTCCCTCCGTATTTTAA
TGTATGACGCCGTTGACTTTTTGATAAATGTTTGACCTTTCATATTATTCAAAAAATTTATATA
ATTATAATTTATTTTATTGTGATTTAATTTATCATGAAATGTTCTTTAAGCATGACATAAGTAT
TTTTATATTTGCATAAAAATTTTGAATAAGACGAGTAGTCAAACGTTGATTAAAAAATTCAACG
GCGTCATATATTAAAATACGGAGGGAGTACTATATAGTAGTAATAAATATAGTAGTAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021