Detail information of Os09g0436800_circ_g.2


General Information
CircRNA Name Os09g0436800_circ_g.2
ID in PlantcircBase osa_circ_039299
Alias Os09circ06027/Os_ciR581,
Organism Oryza sativa
Position chr9: 16094728-16095374  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ, CIRI-long
Parent gene Os09g0436800
Parent gene annotation CAAX amino terminal protease domain containing protein. (Os09t04
36800-01)
Parent gene strand +
Alternative splicing Os09g0436800_circ_g.1
Support reads 5/60/4
Tissues leaf/root/shoot, root, seed, pistil, leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0436800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTAGTTTTCAGATCATGGCTTCCAGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCCAT
TCTGATATCTGGGGTTGCATTTTCTCTTATTCACCGgatcatgggattttccttcatggtattt
gtgctatggtctcctgttgtgattcctctactgccaacacttgtacaaagttggacaataagtt
cttcaaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 191
Transcript exons: 16094728-16094862,16095319-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTACTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTATTCACCG

Transcript length: 196
Transcript exons: 16094728-16094848,16095300-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCAGAAGAA
GTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTATTC
ACCG

Transcript length: 230
Transcript exons: 16094728-16094781,16095199-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCCTCAAGTCTT
CTAGTAATGTACTATTGCTAGCTCTCAGAGGATTTGTCACAGCAACTAGTATTGCTGTGGTGGA
AGAAGTAGTTTTCAGATCATGGCTTCCAGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCC
ATTCTGATATCTGGGGTTGCATTTTCTCTTATTCACCG

Transcript length: 237
Transcript exons: 16094728-16094892,16095303-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGAGAAGTTGCTGTTGACCTTGGCTACTA
CAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTATTCACCG

Transcript length: 239
Transcript exons: 16094728-16094938,16095347-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGGGGTAAAAGAATACGTGGCTACGAAAA
TCCAGTTGAGCAATATGGGCTGGGGTTGCATTTTCTCTTATTCACCG

Transcript length: 262
Transcript exons: 16094728-16094858,16095244-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAGATCATGGCTTCCAGAAG
AAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTAT
TCACCG

Transcript length: 271
Transcript exons: 16094728-16094864,16095241-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTTTGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAGATCATGGC
TTCCAGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATT
TTCTCTTATTCACCG

Transcript length: 279
Transcript exons: 16094728-16094882,16095251-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAG
ATCATGGCTTCCAGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGG
GTTGCATTTTCTCTTATTCACCG

Transcript length: 282
Transcript exons: 16094728-16094901,16095267-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGGGGTAAAAGGGTGGAAGAAGTAGTTTT
CAGATCATGGCTTCCAGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCT
GGGGTTGCATTTTCTCTTATTCACCG

Transcript length: 312
Transcript exons: 16094728-16094893,16095217-16095317,16095330-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGGGTACTATTGCTAGCTCTCAGAGGATT
TGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAGATCATGGCTTCCAGAAGAA
GTTGCTGTTGACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTATTCACCG

Transcript length: 322
Transcript exons: 16094728-16094780,16094801-16094901,16095172-16095272,16
095308-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCAAAGTTGGAC
AATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTGGACTGTATGTGTCTATAATG
ATACTTGTCATATTGTGGGGTAAAAGTCATTCGTGACTAGGCCACTTGATCTTCTCAAGTCTTC
TAGTAATGTACTATTGCTAGCTCTCAGAGGATTTGTCACAGCAACTAGTATTGCTGTGGTGGAT
TGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTATTCAC
CG

Transcript length: 396
Transcript exons: 16094728-16094934,16095185-16095299,16095301-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGGGGTAAAAGAATACGTGGCTACGAAAA
TCCAGTTGAGCAATAGGCCACTTGATCTTCTCAAGTCTTCTAGTAATGTACTATTGCTAGCTCT
CAGAGGATTTGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAGATCATGGCTT
CCGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTC
TCTTATTCACCG

Transcript length: 543
Transcript exons: 16094728-16094962,16095067-16095374
GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGGGGTAAAAGAATACGTGGCTACGAAAA
TCCAGTTGAGCAATATGGGATGAATCTTGCATCTGTATCAAGGGTACAAGAATTTTTGCAAGGT
CTTGCTGGAGGTATAACTGTTGTTGGATTGGTGCATTCAGTAAGCATTTTACTTGGCTTTGCAG
CTCTTCGTGCAGGGTCATATTCATTCGTGACTAGGCCACTTGATCTTCTCAAGTCTTCTAGTAA
TGTACTATTGCTAGCTCTCAGAGGATTTGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTA
GTTTTCAGATCATGGCTTCCAGAAGAAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGA
TATCTGGGGTTGCATTTTCTCTTATTCACCG

Genomic sequence GATCATGGGATTTTCCTTCATGGTATTTGTGCTATGGTCTCCTGTTGTGATTCCTCTACTGCCA
ACACTTGTACAAAGTTGGACAATAAGTTCTTCAACAGGAATTGTTGGATATGCTTGCATTGTTG
GACTGTATGTGTCTATAATGATACTTGTCATATTGTGGGGTAAAAGAATACGTGGCTACGAAAA
TCCAGTTGAGCAATATGGGATGAATCTTGCATCTGTATCAAGGGTATGAACTGTCTTGCCTGTG
TAACACTAGGTCTTTGTATAATAAAGATTTGTGTAATGTTCCCGTCACATATATAATAACTTGC
ATATTTCATTTGGTTGCAGGTACAAGAATTTTTGCAAGGTCTTGCTGGAGGTATAACTGTTGTT
GGATTGGTGCATTCAGTAAGCATTTTACTTGGCTTTGCAGCTCTTCGTGCAGGGTCATATTCAT
TCGTGACTAGGCCACTTGATCTTCTCAAGTCTTCTAGTAATGTACTATTGCTAGCTCTCAGAGG
ATTTGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAGATCATGGCTTCCAGAA
GAAGTTGCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTA
TTCACCG
Conservation Information
Conserved circRNAs osi_circ_008078* osi_circ_018513
PMCS 0.668400528
Functional Information
Coding potential Y
Potential coding position 16094888-16095371(-)
Potential amino acid sequence MTSIIIDTYSPTMQAYPTIPVEELIVQLCTSVGSRGITTGDHSTNTMKENPMIR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA