Detail information of Os02g0164000_circ_g.2


General Information
CircRNA Name Os02g0164000_circ_g.2
ID in PlantcircBase osa_circ_013303
Alias NA
Organism Oryza sativa
Position chr2: 3442968-3445417  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0164000
Parent gene annotation Peptidase C48, SUMO/Sentrin/Ubl1 domain containing protein. (Os0
2t0164000-00)
Parent gene strand -
Alternative splicing Os02g0164000_circ_g.1 Os02g0164000_circ_igg.1 Os02g0164000_circ_igg.2 Os02g0164000_circ_igg.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0164000-00:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAGTAAATCTTCACCATATCCTGCTTCCAAACAGCTATACGAGGAACATCTTTCGGCACATT
TTTTGAACCAAAGTCACGATGATCAAGATACAAAATaccaatggaaggaaaaaagtagttcttc
ttggatttggatggatggtttttgtgaaacaaggactggcaaaatgcagagatcacaaatccat
taacatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACCAATGGAAGGAAAAAAGTAGTTCTTCTTGGATTTGGATGGATGGTTTTTGTGAAACAAGGAC
TGGCAAAATGCAGAGATCACAAATCCATTAACATCTCCTCCCTTTTTCAAAGAATTGCCGAAGT
TGCAAAATGAGATGCGAACATTATCAATGTTAACAGCATCCTCGCTGCAGAAAAAGATATAAAA
AGCTTCATTGAGAGAAAGTAATACAACAAAAAAATATAATAAAAAAGAACACACGAATTGAGAA
AAACAAAAAAAAAGAATTAAATTACTCTTGATATTCACTATCTGACAAGCTACAAATAGCATTG
TAATATCTGTGTGCATTGTCTGATACAACAAAACGACGCCTTGGACAAACAAATGGGTCACTTC
TGTGCTTGGCAGGATGTATAATCCTCCTTGGCCCATACAGAGGCACTTTACCACCAGAAGAGCT
AAGTCCAGAATTGTTAATACAAGGAATCGACGCATGAGATGAGTTTGTCAGCTGCTTAGTTGTA
TTGCAAATGTCATTTGGTGAGTTCTGGGAAAAAAATAACGCAAACAAGTTAAGTGACTATGAAA
GCAGCTAAAATACTAGAGCAAAAAGAGAAAGATAATGTTGTGAAAGTTTAGTAAATAACTAAAC
ATTGATAGGTACTATTTAATGGCGCTGATAAGAATACAGTGGTGGTGAAGCAACTATGGAACTT
ATTGAAAATATATGAAAACACACCATCTTTTAAAAAAAGAGATGCTCTAAAAAATATAAAAACA
AAGCAGAATGTATATCTAATGGATATAGTTCACTCACAGTTAAATCTTGGAATGTTCTCTTCAT
GCCAATTTGAGAGGGGTTCAGATTAGCATGTCTTCTATAAGTGTTATTGTTCAATCTGGTTCTT
GTACCAAGTGGTGGAGTCATATAATCAGGACCAGCAAAAGTGGCAGGCTTCAATAATAAATAAC
ACGAATTATAATACAAAATATGAAATCACAAATATAAATCAAAACAAAAAAAATATCAGGAAAC
AAATTGGAAAAAGAAAAAAGACTCACATTTGCAGGTGCTTCATTTTCTTTGCCATGTGTATGTG
ATTTCAAAGTATCTGGTGTGCAAACATTCTCGCCAATATTGTATTCATGGAAAATGTCAAATGC
AAGTTTATCCTCATCATAAATGTGACCTCTGTTGTCACGGTTGTTAAATTCAGCTAACCTGGAC
TTAAACTCCATCGCAATTTTTGTAAGAAGAGCAGGTGGTTCTGCACATGTAGAAAAATTAAATT
AGGAAATCAAGACATGAATACAAAGAAATGGCAAAAAATATACATTAGCAAAAAGGAAAAGGGT
GCAGTACCTTTAATTGATTCACTGCCACAACTTTTAGAATTTGGAGGACACACAGTACCAGGAG
TACAGAAAGCTTGGCCTGGTTATAAATACAGATTAAAAATCATCATAAAGAAAAATGGAAGACA
TTAGATAAATGTAACAAATCGAAAAGATAATAAGCTATTCATTTACCTTCACAACAACAATTTA
AACTGCCATCGCTATGAACGATATTTGGAGCCTGCACAAAAAGAATGTTAATTATTGAAAGCAT
AACAGTAAAAAAAATAGCTCCAAAAGATTAGTAAAAATGAAATACTAACAAAAAGAACGGAATG
CTTACATCAATAACATTATTGTCTGCTAAATCATTAGTCAAGTGTTCCCCGTGTCCTTGATCAA
GATTGGCATCAATATCAATATCTGTAAAATGGATATATGAATGTGGTGATTTGAAAATGAAAGA
AATAAAAAAAATGTAAACTAGAATGATTAATTTGCAAAAAAAAAAAACAACCTACTTACCAGCA
TTCCTATCAGAAGATGGGTAATCTTTCCCACAAGATTTTGGAATAGCATTTTCAGTAGGTGTAT
TAGTTCTATTTTCAGCAGAAGCATTATTGTACGCAGCACGAACAAAATGGCTAGCACTAGCATC
AATCAAAATCTGTAAAGCACTAATCAAGACATCTTCGCAAGAATTGTTCTTTGCGGCATGATTT
GCTGAAAAATGAGAATCCATCAAATCAGATATGCTGTCCTTCAAATTTGCAGGCAAATTGTCTC
CTATAGCTGTATCCAACTTGTTGCGAAATGATTCTGAATTTTGCACATGTACAGGCTACAGTAG
AAAAAAATAAGAACAAAATTTGATGATACAACACAAAAGGACATAAAAAATAAAGAAAAAAAAA
CCAAACAGCTATAGTAACATGTAAGAAAAAAAATACCTTATAGTAACATGTATCAGAGAAATCT
TTAAGAGGCCTCGGTCCATAATTCTCATCATCAATTTCATCTAAATCAGAGTAAATCTTCACCA
TATCCTGCTTCCAAACAGCTATACGAGGAACATCTTTCGGCACATTTTTTGAACCAAAGTCACG
ATGATCAAGATACAAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.095808524
Functional Information
Coding potential Y
Potential coding position 3445401-3443102(+)
3445338-3442970(-)
Potential amino acid sequence MIKIQNTNGRKKVVLLGFGWMVFVKQGLAKCRDHKSINISSLFQRIAEVAK*(+)
MVKIYSDLDEIDDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDL
MDSHFSANHAAKNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKD
YPSSDRNADIDIDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPP
NSKSCGSESIKEPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPD
TLKSHTHGKENEAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNS
PNDICNTTKQLTNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSD
NAHRYYNAICSLSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPS
KSKKNYFFPSIGILYLDHRDFGSKNVPKDVPRIAVWKQDMVKIYSDLDEIDDENYGPRPLKDFS
DTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDLMDSHFSANHAAKNNSCEDVLISALQ
ILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKDYPSSDRNADIDIDANLDQGHGEHLT
NDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAMEFK
SRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPDTLKSHTHGKENEAPANPATFAGPDY
MTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNSPNDICNTTKQLTNSSHASIPCINNS
GLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSDNAHRYYNAICSLSDSEYQDEDAVNI
DNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPSKSKKNYFFPSIGILYLDHRDFGSKN
VPKDVPRIAVWKQDMVKIYSDLDEIDDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIG
DNLPANLKDSISDLMDSHFSANHAAKNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTN
TPTENAIPKSCGKDYPSSDRNADIDIDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCC
EGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDI
FHEYNIGENVCTPDTLKSHTHGKENEAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPS
QIGMKRTFQDLTNSPNDICNTTKQLTNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRS
DPFVCPRRRFVVSDNAHRYYNAICSLSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVI
SAFCQSLFHKNHPSKSKKNYFFPSIGILYLDHRDFGSKNVPKDVPRIAVWKQDMVKIYSDLDEI
DDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDLMDSHFSANHAA
KNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKDYPSSDRNADID
IDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPPNSKSCGSESIK
EPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPDTLKSHTHGKEN
EAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNSPNDICNTTKQL
TNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSDNAHRYYNAICS
LSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPSKSKKNYFFPSI
G(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017