Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os02g0164000_circ_g.2 |
| ID in PlantcircBase | osa_circ_013303 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr2: 3442968-3445417 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os02g0164000 |
| Parent gene annotation |
Peptidase C48, SUMO/Sentrin/Ubl1 domain containing protein. (Os0 2t0164000-00) |
| Parent gene strand | - |
| Alternative splicing | Os02g0164000_circ_g.1 Os02g0164000_circ_igg.1 Os02g0164000_circ_igg.2 Os02g0164000_circ_igg.3 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os02t0164000-00:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.095808524 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
3445401-3443102(+) 3445338-3442970(-) |
| Potential amino acid sequence |
MIKIQNTNGRKKVVLLGFGWMVFVKQGLAKCRDHKSINISSLFQRIAEVAK*(+) MVKIYSDLDEIDDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDL MDSHFSANHAAKNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKD YPSSDRNADIDIDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPP NSKSCGSESIKEPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPD TLKSHTHGKENEAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNS PNDICNTTKQLTNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSD NAHRYYNAICSLSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPS KSKKNYFFPSIGILYLDHRDFGSKNVPKDVPRIAVWKQDMVKIYSDLDEIDDENYGPRPLKDFS DTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDLMDSHFSANHAAKNNSCEDVLISALQ ILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKDYPSSDRNADIDIDANLDQGHGEHLT NDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAMEFK SRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPDTLKSHTHGKENEAPANPATFAGPDY MTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNSPNDICNTTKQLTNSSHASIPCINNS GLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSDNAHRYYNAICSLSDSEYQDEDAVNI DNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPSKSKKNYFFPSIGILYLDHRDFGSKN VPKDVPRIAVWKQDMVKIYSDLDEIDDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIG DNLPANLKDSISDLMDSHFSANHAAKNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTN TPTENAIPKSCGKDYPSSDRNADIDIDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCC EGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDI FHEYNIGENVCTPDTLKSHTHGKENEAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPS QIGMKRTFQDLTNSPNDICNTTKQLTNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRS DPFVCPRRRFVVSDNAHRYYNAICSLSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVI SAFCQSLFHKNHPSKSKKNYFFPSIGILYLDHRDFGSKNVPKDVPRIAVWKQDMVKIYSDLDEI DDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDLMDSHFSANHAA KNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKDYPSSDRNADID IDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPPNSKSCGSESIK EPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPDTLKSHTHGKEN EAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNSPNDICNTTKQL TNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSDNAHRYYNAICS LSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPSKSKKNYFFPSI G(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |