Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0164000_circ_g.2 |
ID in PlantcircBase | osa_circ_013303 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 3442968-3445417 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0164000 |
Parent gene annotation |
Peptidase C48, SUMO/Sentrin/Ubl1 domain containing protein. (Os0 2t0164000-00) |
Parent gene strand | - |
Alternative splicing | Os02g0164000_circ_g.1 Os02g0164000_circ_igg.1 Os02g0164000_circ_igg.2 Os02g0164000_circ_igg.3 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0164000-00:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.095808524 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3445401-3443102(+) 3445338-3442970(-) |
Potential amino acid sequence |
MIKIQNTNGRKKVVLLGFGWMVFVKQGLAKCRDHKSINISSLFQRIAEVAK*(+) MVKIYSDLDEIDDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDL MDSHFSANHAAKNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKD YPSSDRNADIDIDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPP NSKSCGSESIKEPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPD TLKSHTHGKENEAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNS PNDICNTTKQLTNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSD NAHRYYNAICSLSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPS KSKKNYFFPSIGILYLDHRDFGSKNVPKDVPRIAVWKQDMVKIYSDLDEIDDENYGPRPLKDFS DTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDLMDSHFSANHAAKNNSCEDVLISALQ ILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKDYPSSDRNADIDIDANLDQGHGEHLT NDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAMEFK SRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPDTLKSHTHGKENEAPANPATFAGPDY MTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNSPNDICNTTKQLTNSSHASIPCINNS GLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSDNAHRYYNAICSLSDSEYQDEDAVNI DNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPSKSKKNYFFPSIGILYLDHRDFGSKN VPKDVPRIAVWKQDMVKIYSDLDEIDDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIG DNLPANLKDSISDLMDSHFSANHAAKNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTN TPTENAIPKSCGKDYPSSDRNADIDIDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCC EGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDI FHEYNIGENVCTPDTLKSHTHGKENEAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPS QIGMKRTFQDLTNSPNDICNTTKQLTNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRS DPFVCPRRRFVVSDNAHRYYNAICSLSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVI SAFCQSLFHKNHPSKSKKNYFFPSIGILYLDHRDFGSKNVPKDVPRIAVWKQDMVKIYSDLDEI DDENYGPRPLKDFSDTCYYKPVHVQNSESFRNKLDTAIGDNLPANLKDSISDLMDSHFSANHAA KNNSCEDVLISALQILIDASASHFVRAAYNNASAENRTNTPTENAIPKSCGKDYPSSDRNADID IDANLDQGHGEHLTNDLADNNVIDAPNIVHSDGSLNCCCEGQAFCTPGTVCPPNSKSCGSESIK EPPALLTKIAMEFKSRLAEFNNRDNRGHIYDEDKLAFDIFHEYNIGENVCTPDTLKSHTHGKEN EAPANPATFAGPDYMTPPLGTRTRLNNNTYRRHANLNPSQIGMKRTFQDLTNSPNDICNTTKQL TNSSHASIPCINNSGLSSSGGKVPLYGPRRIIHPAKHRSDPFVCPRRRFVVSDNAHRYYNAICS LSDSEYQDEDAVNIDNVRISFCNFGNSLKKGGDVNGFVISAFCQSLFHKNHPSKSKKNYFFPSI G(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |