Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09795_circ_g.2 |
ID in PlantcircBase | ath_circ_001752 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3175753-3176210 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G09795 |
Parent gene annotation |
ATP phosphoribosyltransferase 2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G09795_circ_g.3 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G09795.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.197128093 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3175753-3176207(+) |
Potential amino acid sequence |
MGIADAILDLVSSGTTLKENNLKEIEGGVVLESQAALVASRRALTERKGALETVHEILERLEAH LKANGQFTVVANMRGTDAEEVAERVKTQPSLSGLQMGIADAILDLVSSGTTLKENNLKEIEGGV VLESQAALVASRRALTERKGALETVHEILERLEAHLKANGQFTVVANMRGTDAEEVAERVKTQP SLSGLQMGIADAILDLVSSGTTLKENNLKEIEGGVVLESQAALVASRRALTERKGALETVHEIL ERLEAHLKANGQFTVVANMRGTDAEEVAERVKTQPSLSGLQMGIADAILDLVSSGTTLKENNLK EIEGGVVLESQAALVASRRALTERKGALETVHEILERLEAHLKANGQFTVVANMRGTDAEEVAE RVKTQPSLSGLQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |