Detail information of BGIOSGA023080_circ_g.1


General Information
CircRNA Name BGIOSGA023080_circ_g.1
ID in PlantcircBase osi_circ_006789
Alias 6:21874945|21878001
Organism Oryza sativa ssp. indica
Position chr6: 21874945-21878001  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA023080
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA023080_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA023080-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAATGGTGAACTAATTTTAGCAAATCCTGCAAAACGAGGAAAGGAAGGACATAAGTTGTTCA
AATTCAACAAAGTTCTTGGCCCCTCTGCTAGTCAAGaaccatcttctcctttatctcagaccac
attatcttctatatcacgccatgcgggacacagttttcatgatgtcttccaactcagacaagga
cgctattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACCATCTTCTCCTTTATCTCAGACCACATTATCTTCTATATCACGCCATGCGGGACACAGTTT
TCATGATGTCTTCCAACTCAGACAAGGACGCTATTCTGATCTGCCCAGTTCTAAAATTTCTGAG
ATGATGAAATCCACCAGCTTGGATGTAAGTTTCGCATAAGATTTTTTTTTGCGAGAATTATTTG
CGAAATAAAAATATTTTCTTGCAAAATCAATGATCTTTATTATCTGTTTCATGACAATAATTTT
GCAGAATGCCCCTACTCAGTCACTTTTGAGTGTTGTGAATGTGATCCTTGATGAGCTTGTTGAG
ACGAAGATTGGAGAAATTCCTTATGTAGGCTACTCAAAAGCAATGCAGTTAGTTTGTTCCTTTC
ATGCTTCAAAATTTTGATATTTTTGTTGTTTATCCCCTTTCATCCTGTTGAATATAATATTCTT
TGCACAGCATCTTGCTTGCCTGTTGAGAAAGGTCATACTGGAGATTGAGCGGCGTATTTCTACT
CAGGCAGAGCATATAAGAAATGTAAGGGCTACTTTTTCCTGCTTATTTCTCAGATCATTCCTGT
TGTAATAGTTGCCTGTATGCAGCAAAATAACCTTATGAAAGCACGTGAAGAGAAATACAAATCA
AGGATAAGAGTGCTAGAGGCACTTGCAAGTGGAACAAGTGACCAAACACATGTAAACTCAAATG
CAACAAATGGAAAAGCACATGTAAAGTTCAATGATTGTGATCTTACTATGGATTCCAAGTTATT
ATTGAAACTTTGAATTTAAATGGTAAATTGCCTTGTATGTTTTGTTGATTGTTTTCAGGTTTCT
CCAGATCATGCAGTGCACCAGATGAAGGTTTGTTTACTTCTCATGTAAAATAGATACCTCTTTC
TATCACCATCTTTGCATATAGTTTACACAAGCTATAGCTATTATTATTTTTAGATAACGGAATA
AATTCTGGCTTTTGCTTCAAAGAAGCTGCAGCCACTTATTACAATACTCACAAAGAGAGCAAAC
ACTCAGGCAACAAAAAGAACTGAAATAATAAAGCCAACACATAAGAAGAAAACAGTTAAATTCT
TTCAAATAATGCACTTGCTGTCAAATTCTGCATCAGTTCTTCAATCCTCACAAAGTAGCACCTG
TTTAGAAGTTGAGAAAGATTTTCTCCATCTTTGCATTAAGTAGGAAAAAGATCCATACAACAAA
ATTATCCATACCAGGAAAGACCCCTTACTGCATGAATCTGTAAGTATCTTTTTTCTTAAGGTCT
AGCTTTATTTAACCATCCACCTGAATAGTTGTTAAAGGAGCTGGTACATGAGTTTCGGTTTGGA
AGAAAATAATCGATGTACTAGCTTCTGTGGTGACCTGGTAATAGCCTGCTCTGCTAGGTCACCA
CTTGCATGCTATACCCAGTAGGCCAGTAACCCAAAAAGGCGTCATCAATGAGAATCCACCATTT
TAAGATCCCTCTTGCCTGTGTGAAGATATGAGGTGTTTTCTGAAAGAGATCGGTGCATCAACAT
TGAGGCATCATTGTCTATAGAGCTTCAGGTCAAAGCTACTACAGGTTTAGGTTCTCCTGTTCAG
CGTACTGCTTATATTAAGCCTCTTTGTATGATGAAGCTTATATTTGAGAAGCTGCATCCTGAAC
TTGCAGTTGTCTCTATTGACCCATTTGCTGTGTGCTAATAATAAGTCGTTTTTTTTCCGCAGAT
GGAGAAAGACAAAACTGAAGATAAAAAACGATTAGCCGAGAAAGATGTAGTATTGTTGGTGAAG
GACAAGGAAGAAGATGTAACTAGATTAACAAAGGATAAAGAAGACATGGCAAAATTGTTGAAGG
ACAAGGAAGATATAATTAGATTGATGAAGGAGAAGGAAGAAATGGTTTGGATGATGAGGGAGAA
GGAAAACATGGTTAGTTTAAATAATGGCAGGGTTGAAGATAAACATCAACTGACAGATAAAGAT
GTAGCTAATTCAGCTAAGTACAGGAATGAAATCATTAAGTTGATGAAGGAGAAAGAAGATAGTA
ATGATACAATTATGAAATTAAATATAGAACTGGAAGCTATGAAATCCTCATATGAAGGAACCCG
CATTCTGTTAGATTCTAAGAAGAAAGAGGTACTTCAGCTTTTGATGGACAAGGAGAGCATTGAA
TATATAGTATCACAACTTAAGCAAGAGCTTGCAATAGAAAGAAGCTCACATCAGACACATATTC
AAGAATTGGAGACTAGGGCTTTTCAGGCAAATAATAAATTAGAACAAAGGATAAAGGAAATGGA
GCTCATGCTAGAAGACTCTAAAACAAGAGTAAGAGATCTTGAGGAATTGTTAGAATCAAGAAGC
CAAACTTGGGAGCAAAAGGAAATCAGGCTGAACCAATTTATTGGTCTACAAATACAGAATATTC
AGGTATTGATTGGCCATATCACTTTTTCCCACTATATTTCTTTTAAGAGTTTGTGAAGTCATCA
ATTTAAGCTTAAAATTGTCGCTTACCAGGATTTGAGGTTGTCTTCTGTTTCCATCAGGCATGAA
ATCCTACACTGCCAGAAAAGATGGTCTGAAGAAATTTGTGACCTCGGTGAGAATAAATGAAATA
AGTTATTTTAGTCCACATGGAATAGACATACTGTAGTTATCATTTTATAACTTTCATATCATTT
ACAACTCTGCAGGACAAAGCCTTAAGGTATTGACAAATGCTGCTGAAAATTATCATGCTACTCT
TGAAGAAAACAGAAAATTATTCAATGAGGTTCAGGAGCTAAAAGGTTGCAAAGCAAACAGTATT
GCTCATTTATATGCTGATATCCTTAACTATCAACTTCTTATATTATATGCTTATTTATCAGGAA
ATATCAGAGTCCATTGCCGGATAAGGCCTTTTCTTCCTGGAGAGGATCAGACATCTACTACAAT
TGAATATGTTGGTGATAATGGTGAACTAATTTTAGCAAATCCTGCAAAACGAGGAAAGGAAGGA
CATAAGTTGTTCAAATTCAACAAAGTTCTTGGCCCCTCTGCTAGTCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 21875074-21877998(+)
Potential amino acid sequence MMKSTSLDNAPTQSLLSVVNVILDELVETKIGEIPYHLACLLRKVILEIERRISTQAEHIRNQN
NLMKAREEKYKSRIRVLEALASGTSDQTHVNSNATNGKAHVSPDHAVHQMKMEKDKTEDKKRLA
EKDVVLLVKDKEEDVTRLTKDKEDMAKLLKDKEDIIRLMKEKEEMVWMMREKENMVSLNNGRVE
DKHQLTDKDVANSAKYRNEIIKLMKEKEDSNDTIMKLNIELEAMKSSYEGTRILLDSKKKEVLQ
LLMDKESIEYIVSQLKQELAIERSSHQTHIQELETRAFQANNKLEQRIKEMELMLEDSKTRVRD
LEELLESRSQTWEQKEIRLNQFIGLQIQNIQDLRLSSVSIRHEILHCQKRWSEEICDLGQSLKV
LTNAAENYHATLEENRKLFNEVQELKGNIRVHCRIRPFLPGEDQTSTTIEYVGDNGELILANPA
KRGKEGHKLFKFNKVLGPSASQEPSSPLSQTTLSSISRHAGHSFHDVFQLRQGRYSDLPSSKIS
EMMKSTSLDNAPTQSLLSVVNVILDELVETKIGEIPYHLACLLRKVILEIERRISTQAEHIRNQ
NNLMKAREEKYKSRIRVLEALASGTSDQTHVNSNATNGKAHVSPDHAVHQMKMEKDKTEDKKRL
AEKDVVLLVKDKEEDVTRLTKDKEDMAKLLKDKEDIIRLMKEKEEMVWMMREKENMVSLNNGRV
EDKHQLTDKDVANSAKYRNEIIKLMKEKEDSNDTIMKLNIELEAMKSSYEGTRILLDSKKKEVL
QLLMDKESIEYIVSQLKQELAIERSSHQTHIQELETRAFQANNKLEQRIKEMELMLEDSKTRVR
DLEELLESRSQTWEQKEIRLNQFIGLQIQNIQDLRLSSVSIRHEILHCQKRWSEEICDLGQSLK
VLTNAAENYHATLEENRKLFNEVQELKGNIRVHCRIRPFLPGEDQTSTTIEYVGDNGELILANP
AKRGKEGHKLFKFNKVLGPSASQEPSSPLSQTTLSSISRHAGHSFHDVFQLRQGRYSDLPSSKI
SEMMKSTSLDNAPTQSLLSVVNVILDELVETKIGEIPYHLACLLRKVILEIERRISTQAEHIRN
QNNLMKAREEKYKSRIRVLEALASGTSDQTHVNSNATNGKAHVSPDHAVHQMKMEKDKTEDKKR
LAEKDVVLLVKDKEEDVTRLTKDKEDMAKLLKDKEDIIRLMKEKEEMVWMMREKENMVSLNNGR
VEDKHQLTDKDVANSAKYRNEIIKLMKEKEDSNDTIMKLNIELEAMKSSYEGTRILLDSKKKEV
LQLLMDKESIEYIVSQLKQELAIERSSHQTHIQELETRAFQANNKLEQRIKEMELMLEDSKTRV
RDLEELLESRSQTWEQKEIRLNQFIGLQIQNIQDLRLSSVSIRHEILHCQKRWSEEICDLGQSL
KVLTNAAENYHATLEENRKLFNEVQELKGNIRVHCRIRPFLPGEDQTSTTIEYVGDNGELILAN
PAKRGKEGHKLFKFNKVLGPSASQEPSSPLSQTTLSSISRHAGHSFHDVFQLRQGRYSDLPSSK
ISEMMKSTSLDNAPTQSLLSVVNVILDELVETKIGEIPYHLACLLRKVILEIERRISTQAEHIR
NQNNLMKAREEKYKSRIRVLEALASGTSDQTHVNSNATNGKAHVSPDHAVHQMKMEKDKTEDKK
RLAEKDVVLLVKDKEEDVTRLTKDKEDMAKLLKDKEDIIRLMKEKEEMVWMMREKENMVSLNNG
RVEDKHQLTDKDVANSAKYRNEIIKLMKEKEDSNDTIMKLNIELEAMKSSYEGTRILLDSKKKE
VLQLLMDKESIEYIVSQLKQELAIERSSHQTHIQELETRAFQANNKLEQRIKEMELMLEDSKTR
VRDLEELLESRSQTWEQKEIRLNQFIGLQIQNIQDLRLSSVSIRHEILHCQKRWSEEICDLGQS
LKVLTNAAENYHATLEENRKLFNEVQELKGNIRVHCRIRPFLPGEDQTSTTIEYVGDNGELILA
NPAKRGKEGHKLFKFNKVLGPSASQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021