Plant Circular RNA Database

Detail information of Os02g0217600_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os02g0217600_circ_g.3
					
						ID in PlantcircBase
						osa_circ_013881
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 6574316-6576456  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0217600						
					
						Parent gene annotation
						
							Similar to Isoform 2 of Serine/threonine-protein phosphatase PP2
A-3 catalytic subunit. (Os02t0217600-01);Similar to Protein phos
phatase 2A. (Os02t0217600-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0217600_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0217600-02:4
Os02t0217600-01:4

General Information
CircRNA Name	Os02g0217600_circ_g.3
ID in PlantcircBase	osa_circ_013881
Alias	NA
Organism	Oryza sativa
Position	chr2: 6574316-6576456 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0217600
Parent gene annotation	Similar to Isoform 2 of Serine/threonine-protein phosphatase PP2 A-3 catalytic subunit. (Os02t0217600-01);Similar to Protein phos phatase 2A. (Os02t0217600-02)
Parent gene strand	-
Alternative splicing	Os02g0217600_circ_g.4
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0217600-02:4 Os02t0217600-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTGCTCTCATGATTTCCTCTCAATATTGTAATTCGATCTCTGTAGCGTACTTTCAAAGCCACCA
ACAACGAAACAGTCTCCACTGAGTAGTAGCCACGGTctgacaccaattaaatccttccattaca
agttgatgtgcccttgagatgagagatagaccatttgtatggttaaactgttgagcgatatctt
gcccaaat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 494
Transcript exons: 6574316-6574507,6575453-6575530,6575612-6575720,6576342-
6576456
CTGACACCAATTAAATCCTTCCATTACAAGTTGATGTGCCCTTGAGATGAGAGATAGACCATTT
GTATGGTTAAACTGTTGAGCGATATCTTGCCCAAATGTATAACCTGCTCCTCTCGGTGAAATTC
CCCACCCGCATCTGTCATCTGGGTCAGACCACAAAAGATCACACATGGGTCCTTCATGAGGAAC
CTCTTGTATACGATCAAGAGCACGGATGTTATCTAAAGTATCCAATGATGGAGAGAGACCACCG
TGAAGGCAGAACACCTGGTTTTCTATAAGAGCTGTGAGAGGCAAATAATCAAACAAGTCTGTAA
AGTATTTCCATACATTTGCATTTCCATACTTTCTCAAGCATTCATCGTAGAAGCCGTACACTTG
AGTGATTTGTCTGCTCTCATGATTTCCTCTCAATATTGTAATTCGATCTCTGTAGCGTACTTTC
AAAGCCACCAACAACGAAACAGTCTCCACTGAGTAGTAGCCACGGT
						
					

						Genomic sequence
						
							CTGACACCAATTAAATCCTTCCATTACAAGTTGATGTGCCCTTGAGATGAGAGATAGACCATTT
GTATGGTTAAACTGTTGAGCGATATCTTGCCCAAATGTATAACCTGCTCCTCTCGGTGAAATTC
CCCACCCGCATCTGTCATCTGGGTCAGACCACAAAAGATCACACATGGGTCCTTCATGAGGAAC
CTGCAAGCATTTAGTGAAATTTGTAACATTAGCTGACAAAGAACATTTGAGAAATAAAGTGCAA
TTTCTTCTGCAAATGCAACAGAAGTATGGGCACAAGAGCTAACAAATATCACCGGTAACCATCA
TAAGCACAACCTCCTAGATAATCATCTACTGTGAAAAAAAATTCAAGAGCAACAAGTATTTGTT
CAATCATATAAAATCATCCACATCATGACCCACAACACAAACTTCTAACTAAAGTGAACTGTGG
TGCTCTACCTAGAAAACAAGATCCATCTTCAGACATTTACAAATTTGCAGCAGCAGGAAGTGGA
AATATCATAGTAAAAATATTCCTGTCAAAACTAATATAGTTGAATGGTATATCCCCAATTTAGA
CATTCCTTAAAAAGGAATTGGGGCCTGGGGTGATGGTGCATTCTACACCCACCCCCATCAAGAC
CTTTTTAAGCTAACATATGGATGCATCTCCGCATACTTGCGTAGTTAAGTTTTGGTTGTTGGTG
GCTGTATACTCCTTTTTTTTGGGCAATTGAGCATACTTACTACTGCATTCCACTCTTTATCCTA
TAGTATAATTATTTGGCATCTTTTGAAATGTGTGGACTCGCTGCTAGTATATGATATATACCAG
CTAGATAATGCAAATAGTAATTACTACACCTAAATTGATTAATTATATGATATATATACCAGCT
AGATAATGCTCTAATCCTCCAAGTAAAACAAAAATAAACATAATGTCATTTGAAAGCTAAATAG
CTTATTGTTTTATTAATAGCATAAATAGCCCAAATAGCTGCAAAAGTTTCAAAAATCTGCCATT
ATCACCAGAATAGTGGCACACAAGACATGCAGAAGTCAAAATTTAGGGGTACTGCAGATGAAAG
GTGACTAAAGACACTCGCTCATCAAGATAGTGCTAGCACTGCTTCATACCTCTTGTATACGATC
AAGAGCACGGATGTTATCTAAAGTATCCAATGATGGAGAGAGACCACCGTGAAGGCAGAACACC
TATAAAATGGGTGATTCACATGTCAGGCATATATTGGATAAGCCTATATCAGTTAAACCGCAAT
TAGTCAAGTAACAAACCTGGTTTTCTATAAGAGCTGTGAGAGGCAAATAATCAAACAAGTCTGT
AAAGTATTTCCATACATTTGCATTTCCATACTTTCTCAAGCATTCATCGTAGAAGCCGTACCTG
TAGAAAAACAGTAGTTTTCATTAACCCACTGAAGAACTATCTATTGGGTTGAAAATATTGAAAC
AAGAATATTTTTTAGCATTCCTATCATTTAAAAAATTGCATAAAGAAATAGCTAGAAACAAAAA
CCATGAAGCATAGTGGCAATAAAATTACAATCCAATTAAATATAAGCAACCTATGCTGTAATAA
ACCACAAATTCGTGCCAATAAGGTGAATACAGAAGGACGGATCTAGCTTGAGGTTCTAATCTGA
GAAAATATATGAAAATGACAAAATGGTTTCACAGCATTAAAAAGGTAGATTGTTACAGGTCAGC
AAAGAGGCAAACATTATGTATTAGCTATTTTTGGAAAGTAAATCAGCCAACATGTTTAAGATTC
TGATTGGGTTCTCTAGTTTTGAGGTGTTAAGCACTAATAACTAGAGTCCTGATCAAAAAGCAAG
TTGTTTTCTAAAATTCACAAAAATAATATCCTAGAATATTGATGTGCAATAAAAGATTGCATCT
TTAATGTTTGCCACTTTTTCGTTGTTACAACTATAATAATTGTGCAAGTAGCTAAAAAAGAAGA
AAATATGTGGGGGGAAAATCCAAATCTAGGACATAAACTCACACTTGAGTGATTTGTCTGCTCT
CATGATTTCCTCTCAATATTGTAATTCGATCTCTGTAGCGTACTTTCAAAGCCACCAACAACGA
AACAGTCTCCACTGAGTAGTAGCCACGGT
						
					

			
		

Sequences
Splice junction sequence	CTGCTCTCATGATTTCCTCTCAATATTGTAATTCGATCTCTGTAGCGTACTTTCAAAGCCACCA ACAACGAAACAGTCTCCACTGAGTAGTAGCCACGGTctgacaccaattaaatccttccattaca agttgatgtgcccttgagatgagagatagaccatttgtatggttaaactgttgagcgatatctt gcccaaat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 494 Transcript exons: 6574316-6574507,6575453-6575530,6575612-6575720,6576342- 6576456 CTGACACCAATTAAATCCTTCCATTACAAGTTGATGTGCCCTTGAGATGAGAGATAGACCATTT GTATGGTTAAACTGTTGAGCGATATCTTGCCCAAATGTATAACCTGCTCCTCTCGGTGAAATTC CCCACCCGCATCTGTCATCTGGGTCAGACCACAAAAGATCACACATGGGTCCTTCATGAGGAAC CTCTTGTATACGATCAAGAGCACGGATGTTATCTAAAGTATCCAATGATGGAGAGAGACCACCG TGAAGGCAGAACACCTGGTTTTCTATAAGAGCTGTGAGAGGCAAATAATCAAACAAGTCTGTAA AGTATTTCCATACATTTGCATTTCCATACTTTCTCAAGCATTCATCGTAGAAGCCGTACACTTG AGTGATTTGTCTGCTCTCATGATTTCCTCTCAATATTGTAATTCGATCTCTGTAGCGTACTTTC AAAGCCACCAACAACGAAACAGTCTCCACTGAGTAGTAGCCACGGT
Genomic sequence	CTGACACCAATTAAATCCTTCCATTACAAGTTGATGTGCCCTTGAGATGAGAGATAGACCATTT GTATGGTTAAACTGTTGAGCGATATCTTGCCCAAATGTATAACCTGCTCCTCTCGGTGAAATTC CCCACCCGCATCTGTCATCTGGGTCAGACCACAAAAGATCACACATGGGTCCTTCATGAGGAAC CTGCAAGCATTTAGTGAAATTTGTAACATTAGCTGACAAAGAACATTTGAGAAATAAAGTGCAA TTTCTTCTGCAAATGCAACAGAAGTATGGGCACAAGAGCTAACAAATATCACCGGTAACCATCA TAAGCACAACCTCCTAGATAATCATCTACTGTGAAAAAAAATTCAAGAGCAACAAGTATTTGTT CAATCATATAAAATCATCCACATCATGACCCACAACACAAACTTCTAACTAAAGTGAACTGTGG TGCTCTACCTAGAAAACAAGATCCATCTTCAGACATTTACAAATTTGCAGCAGCAGGAAGTGGA AATATCATAGTAAAAATATTCCTGTCAAAACTAATATAGTTGAATGGTATATCCCCAATTTAGA CATTCCTTAAAAAGGAATTGGGGCCTGGGGTGATGGTGCATTCTACACCCACCCCCATCAAGAC CTTTTTAAGCTAACATATGGATGCATCTCCGCATACTTGCGTAGTTAAGTTTTGGTTGTTGGTG GCTGTATACTCCTTTTTTTTGGGCAATTGAGCATACTTACTACTGCATTCCACTCTTTATCCTA TAGTATAATTATTTGGCATCTTTTGAAATGTGTGGACTCGCTGCTAGTATATGATATATACCAG CTAGATAATGCAAATAGTAATTACTACACCTAAATTGATTAATTATATGATATATATACCAGCT AGATAATGCTCTAATCCTCCAAGTAAAACAAAAATAAACATAATGTCATTTGAAAGCTAAATAG CTTATTGTTTTATTAATAGCATAAATAGCCCAAATAGCTGCAAAAGTTTCAAAAATCTGCCATT ATCACCAGAATAGTGGCACACAAGACATGCAGAAGTCAAAATTTAGGGGTACTGCAGATGAAAG GTGACTAAAGACACTCGCTCATCAAGATAGTGCTAGCACTGCTTCATACCTCTTGTATACGATC AAGAGCACGGATGTTATCTAAAGTATCCAATGATGGAGAGAGACCACCGTGAAGGCAGAACACC TATAAAATGGGTGATTCACATGTCAGGCATATATTGGATAAGCCTATATCAGTTAAACCGCAAT TAGTCAAGTAACAAACCTGGTTTTCTATAAGAGCTGTGAGAGGCAAATAATCAAACAAGTCTGT AAAGTATTTCCATACATTTGCATTTCCATACTTTCTCAAGCATTCATCGTAGAAGCCGTACCTG TAGAAAAACAGTAGTTTTCATTAACCCACTGAAGAACTATCTATTGGGTTGAAAATATTGAAAC AAGAATATTTTTTAGCATTCCTATCATTTAAAAAATTGCATAAAGAAATAGCTAGAAACAAAAA CCATGAAGCATAGTGGCAATAAAATTACAATCCAATTAAATATAAGCAACCTATGCTGTAATAA ACCACAAATTCGTGCCAATAAGGTGAATACAGAAGGACGGATCTAGCTTGAGGTTCTAATCTGA GAAAATATATGAAAATGACAAAATGGTTTCACAGCATTAAAAAGGTAGATTGTTACAGGTCAGC AAAGAGGCAAACATTATGTATTAGCTATTTTTGGAAAGTAAATCAGCCAACATGTTTAAGATTC TGATTGGGTTCTCTAGTTTTGAGGTGTTAAGCACTAATAACTAGAGTCCTGATCAAAAAGCAAG TTGTTTTCTAAAATTCACAAAAATAATATCCTAGAATATTGATGTGCAATAAAAGATTGCATCT TTAATGTTTGCCACTTTTTCGTTGTTACAACTATAATAATTGTGCAAGTAGCTAAAAAAGAAGA AAATATGTGGGGGGAAAATCCAAATCTAGGACATAAACTCACACTTGAGTGATTTGTCTGCTCT CATGATTTCCTCTCAATATTGTAATTCGATCTCTGTAGCGTACTTTCAAAGCCACCAACAACGA AACAGTCTCCACTGAGTAGTAGCCACGGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012715 zma_circ_002966 						
					
						PMCS
						0.361259462

Conservation Information
Conserved circRNAs	osi_circ_012715 zma_circ_002966
PMCS	0.361259462

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6574491-6576411(-)
						
						Potential amino acid sequence
						
							MCDLLWSDPDDRCGWGISPRGAGYTFGQDIAQQFNHTNGLSLISRAHQLVMEGFNWCQTVATTQ
WRLFRCWWL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6574491-6576411(-)
Potential amino acid sequence	MCDLLWSDPDDRCGWGISPRGAGYTFGQDIAQQFNHTNGLSLISRAHQLVMEGFNWCQTVATTQ WRLFRCWWL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0217600_circ_g.3

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