Detail information of BGIOSGA016643_circ_ig.1


General Information
CircRNA Name BGIOSGA016643_circ_ig.1
ID in PlantcircBase osi_circ_014479
Alias Chr04:24883525_24884694(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22804150-22805319  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGAACTGGTGGAAGACCATATGCTCAGTCATTTTGTGCTTTGCATTTTGGTGGTAACTTAA
ATGCTGCTTAAGTGCTTGGAGAGTTATTTGAACTCAggtaaatatattcaaaaaccatttacct
caagtgatgtattgctgactaaaactgatgagtgcacgtgcaaaagatcatttgtgatgaaagg
tcgtggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAATATATTCAAAAACCATTTACCTCAAGTGATGTATTGCTGACTAAAACTGATGAGTGCA
CGTGCAAAAGATCATTTGTGATGAAAGGTCGTGGTTGAAGGTTATCTGTGTTTTCATAGGTCTT
TTTAAATGTTGTCTGGAATCTGGACAGACACATGTTCCCATATATCTAAAAAAGAAATGAAAAA
AAGGGGTTACTGATTAAAGGAAAATGGAACAGAAAAATGAAAAACGGAGGATACTGTTCTGTAG
GTATTCTCCTTGGCATCTTAACAATTTGTGCAAAACAATGCTTGTAAGTAACAGTAACTGATGT
TTCTGTATCCACCACTCAACAGTGCTGTTCAGCACTATATTTTCACTCCCATCCCATCTGGCTA
TGCACCAATCAACTGTAGGATGCAATGAGGGAAGAATGAAATGTTTCTTTGTAGTTACTGTTCA
TAAGCTATCTAATTGTGAATTTGGAAGTGAATGTTTGGTCTTTTTTTTTTCTTTCCTGTTCGGC
AGCCAACTTTCATTTTCACTTATATAAATAAATCTTTAAAAGAGAGAAACTTCAGTATCTTGTT
ACTCATTATACGTGGTGGACTCTTCCATGTATTTGATCGCTTGCTCCCTTGATGTTCTATTTCA
TGGACTATTTATCTATTCAGGGATAATGTTCACCAACCGTTTACAAATAATATTTGGTTCTTCT
GTTGTATCCTTCTAATCTGAATGGTTTTCAACTCACTGGGAAACAAGTTTGTCTTGCATCGATT
GATGCTTTCGTTCTCTGTATACCACATTTTTAGGATATTATTAGTAACTGTCTAATGTATTGTG
ACTCTTGCAACCTGGAAAAAGGTCTTTTTCCTTTATCTAAATGATAATGAGGTTGAATTAATCA
GCTAAGCATATCTGTAAATATTAACCATTAGCTAAGTTATAGTCATGCGAGGTAGAAGTGGTGA
GATCAAAAGTCAAGATGTCTTTATTTTTATGCAACATGTTGACTACTTCGAAGATATGCTAGTT
AACTCCTTTTATGCGACAAGTGTTTTGCGTAAACTGCCTTTATGCTTTGTGAACTGGTGGAAGA
CCATATGCTCAGTCATTTTGTGCTTTGCATTTTGGTGGTAACTTAAATGCTGCTTAAGTGCTTG
GAGAGTTATTTGAACTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021