Detail information of GLYMA_18G150000_circ_g.1


General Information
CircRNA Name GLYMA_18G150000_circ_g.1
ID in PlantcircBase gma_circ_004713
Alias Gm18circRNA507
Organism Glycine max
Position chr18: 27241052-27241663  JBrowse»
Reference genome v2.0.38
Type   ei-circRNA
Identification method Tophat
Parent gene GLYMA_18G150000
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_18G150000_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   AC-TA
Number of exons covered KRG99502:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATGAGGAAGATCAAGTGCCATGATTCTTTCATGAGGTTTAAGCAATGCAGTGTAGACATGG
AAATTTGCAGGAGACCCTGACAGAGGCTGCACGTTCccttgcgtacacgttcataatcatacag
acgtgcataagcgctagctccagcaacaattaattttggcctgaagagtgttgctgatttctcc
atctgcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGCGTACACGTTCATAATCATACAGACGTGCATAAGCGCTAGCTCCAGCAACAATTAATTT
TGGCCTGAAGAGTGTTGCTGATTTCTCCATCTGCATTTCAAGATTTTCACATCACAAAAACCAC
AAGATGACATAAAAGGGTGACATGAAAATATCAATGAAATGTAGCTAAAAGCATCACAACCATG
ATAAAAATATCCTGCAATGATACCTGGTCATAGTCAATGTATCCCGTACTTTCGTTCAATCTAT
ATGGCATTGTCTCAAAAAATATTGAGACAGCAGATATCTTTTTGGTATCAGTCTGCGTAGTTAT
AGCAGCAATATTAAACGAGTATAATTTTTCATTAATGACCCCAAGGTCTACTCAATCTTTGAAA
AGATATCAAAATAAAAAAGACAATAATTATTAAATAGCCATATACACACTATAGATTTGATTAT
AAGATGAAATGAATGGTGGAAGTTCAAACTTCAAAAGTACCTGATATCCATGAGAAAGATGGCC
ACCATGAGGAAGATCAAGTGCCATGATTCTTTCATGAGGTTTAAGCAATGCAGTGTAGACATGG
AAATTTGCAGGAGACCCTGACAGAGGCTGCACGTTC
Conservation Information
Conserved circRNAs ath_circ_035285
PMCS 0.158467633
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017a