Detail information of BGIOSGA016500_circ_g.2


General Information
CircRNA Name BGIOSGA016500_circ_g.2
ID in PlantcircBase osi_circ_014414
Alias Chr04:22903335_22903613(MH63RS2), Chr04:22903335_22903613(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20572202-20572480  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ, find_circ
Parent gene BGIOSGA016500
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016500_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-GA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCACATTAGTTCTTGCAATCGTACCATGGTTTACAAGATTTTATGTGTGCATATATAAACT
ATCCACACTGCTTGAGTTATCTCTTCTGTTTTGGAGgataaactccaatgaagtggtgtacatt
tatttaaaataagcaaattgaatttcttgtggggaattttctgcctttgtatatttagtaccca
ttttgatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAAACTCCAATGAAGTGGTGTACATTTATTTAAAATAAGCAAATTGAATTTCTTGTGGGGAA
TTTTCTGCCTTTGTATATTTAGTACCCATTTTGATTTTAAGTTGTGGGCAATTGATCTTGAGAC
ATACAATGTTTCATGGCAATTCCAGTTTAGTCTTGTAGGATTTCTTTTTTTGGTGCACATTAGT
TCTTGCAATCGTACCATGGTTTACAAGATTTTATGTGTGCATATATAAACTATCCACACTGCTT
GAGTTATCTCTTCTGTTTTGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021