Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d010716_circ_g.1 |
ID in PlantcircBase | zma_circ_002782 |
Alias | circ1305 |
Organism | Zea mays |
Position | chr8: 125530555-125532164 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d010716 |
Parent gene annotation |
TRAF-like superfamily protein |
Parent gene strand | - |
Alternative splicing | Zm00001d010716_circ_g.2 Zm00001d010716_circ_g.3 |
Support reads | 3 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d010716_T020:3 Zm00001d010716_T017:3 Zm00001d010716_T006:3 Zm00001d010716_T052:3 Zm00001d010716_T030:3 Zm00001d010716_T004:3 Zm00001d010716_T012:3 Zm00001d010716_T027:3 Zm00001d010716_T023:3 Zm00001d010716_T038:3 Zm00001d010716_T014:3 Zm00001d010716_T024:3 Zm00001d010716_T001:3 Zm00001d010716_T003:3 Zm00001d010716_T021:3 Zm00001d010716_T018:2 Zm00001d010716_T028:3 Zm00001d010716_T029:3 Zm00001d010716_T005:3 Zm00001d010716_T010:3 Zm00001d010716_T044:3 Zm00001d010716_T053:3 Zm00001d010716_T022:3 Zm00001d010716_T015:3 Zm00001d010716_T008:3 Zm00001d010716_T026:3 Zm00001d010716_T016:3 Zm00001d010716_T013:3 Zm00001d010716_T009:3 Zm00001d010716_T025:3 Zm00001d010716_T019:3 Zm00001d010716_T002:4 Zm00001d010716_T047:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.070871879 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |