Detail information of Zm00001d004702_circ_g.6


General Information
CircRNA Name Zm00001d004702_circ_g.6
ID in PlantcircBase zma_circ_007266
Alias zma_circ_0000789
Organism Zea mays
Position chr2: 132221634-132226324  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method find_circ
Parent gene Zm00001d004702
Parent gene annotation Signal peptide peptidase-like 3
Parent gene strand -
Alternative splicing Zm00001d004702_circ_g.2 Zm00001d004702_circ_g.3 Zm00001d004702_circ_g.4 Zm00001d004702_circ_g.5 Zm00001d004702_circ_g.7 Zm00001d004702_circ_g.8 Zm00001d004702_circ_g.9 Zm00001d004702_circ_g.10 Zm00001d004702_circ_g.11 Zm00001d004702_circ_g.12
Support reads NA
Tissues leaf, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Zm00001d004702_T001:2
Zm00001d004702_T007:2
Zm00001d004702_T008:2
Zm00001d004702_T005:2
Zm00001d004702_T002:2
Zm00001d004702_T003:2
Zm00001d004702_T004:2
Zm00001d004702_T006:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATCGGACACCTCAGCTGCGCCCAATGTTTGCTCTGAAACATCAACCGGGAGATGGAGTGTAG
AGCCATGTAGTTCACCCTCCTAGGCAGCCGGTAACTcaactgcatatcccacaattagccagag
aaaatatccactcaagacaccctttctgtttgctctgtcaaatctgttcagcgtaatatcaaag
aaatgtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACTGCATATCCCACAATTAGCCAGAGAAAATATCCACTCAAGACACCCTTTCTGTTTGCTCT
GTCAAATCTGTTCAGCGTAATATCAAAGAAATGTGAAACAACAACAAATGCCAAAAAGATATTG
GAAAAAGTAGACATTACAAGGTTGGTGAATAATTACTACACTGAAGGCAAAACTCACTAACCCC
AAGTTACAAGCATAATGATTGTTAATTAGAGCAGTAGTCCCCACATTTACTAAAACTGGAAAAG
ACAAATCCAGATAAGGAAAGAAAATAAAGAATAGTCATCTAATAATCCTGGATGTAGTCGCTCT
ACTTCCCTTAAAATCCTAGGTGGTTTAACCGATAAACTAATTTGCTTCTTAACACCACCATTGC
ATTTAGCAGGACACGAATCAGGGTCTGGTTGTGATAGACAACCAGCGCACAACTATATTGTTCT
ATACGTGAAGCCTTAGTGGAACTAATGGATCACAAGGAAGTAAATAATGTATATGGCAAAATCA
CATACCTATAGCTGAATCCAACAAGCAATCCAGGGAAGATAATGTCACCAAAGCCTATCATATC
ATAACCACCCCATGGATCAAAGAAGCGGGGTATCCTTAGGAGCATAGGAATTGATTCCCCAGTG
TTATCACCACGAGCAACCTGAGTAATTTCCAAAGCATGAATACAGCAAGAATAATCAGGACTCA
ATGGGTAGAAGGTAAAGCAAATGTTGGCTGGTCAAGTTCCCTGTATATGTAATTAGGTTGACAA
TTAGATGAATGGGCAAGTGATAACCATGCAATTATATTATGCACACATATTGTTAGACTCCTGT
TTAGGGTTAGGTTAGGGTTTCCCTGTGTTTACCTAATTACCCCTATTGTAATGGGCTTGGCCCA
CATAACTCTTCTATATAATATACTCCCAATCTAGGATTAGGGTTAGGGTTTCACATATTCCAAC
TTGGTATCTAGCTAGGTTTCTCTCTCCTCCCTCTCACAGTCGCTTGTCGGTCCAAAAAAGGGTA
GACGCTCAGATATCAACACCGTGCTGAAGAAGTCCCGAGATTTGCTAGGAACCTTAAGGGCATG
TTCGGTTATACCAATCCAAAAGGGGATTGGAGGGGATTAAATCCCCTCCTAGTCGAAAATGACT
AGGAGGGGATTTAAACCTCTCCAATCCTCTTCTATATTGGTGTAACCGAACAAGCCCTAATGGG
GAACGAAGCCCAAGGAAGATCTGGATCGGTTTTTTGAAGCCAAAGCCATCGCATACGTAAAGCC
CAACATAATTCCTTAAGATTGGAGATTCCAAATCCCCCAAAATGTAGAGGTCTGCAAACCCTTC
CCCAAGCAACGAGACAATGCCCTCCTTTTGCGTCTTTTCGACCTCTCCAAAGGAAGCCTCTGCG
GATCTTATCAATGACCTTGAGGGCACTTTGAGGAACATCAATTGCCATTGCCAAATAAACCAAC
GCACCAGTGAGGACATGTTGGACTTGCACTCTCCTTCCGGCTCTAGTCATCAACTCAGCCTTCC
ATCCTAGAAGTTGGTCCACTATCTTGTCCACAATTGGTTGTGCTTGCTCCTTTGTAATTTTGCG
GAGAGAGAGAGAGGTAATCCCAAGTATCGACAAGGGAAGGAAGCAAACTCGCAATGCAACCATT
CATGGGCCACCGCCACATCCTCTTCAGAACATTGGATAGGAAACACACTAGATTTCTGATTATT
TTTATGCAGACCTGAGGCTGCTCCAAATAAGCCTAGAATTTCCAAGGTAGCAGCAATATCAGAA
CTAGAAGGATGCAAGAAGATAGCCACATCATCAGCATATAGAGAGATCCGATTATATCTATGTC
TGCTAGATAGCTCCTGCAGCAAACCATCCTCCTCGGCTTTAGATAAGAGATAGCCCAAGACATC
CATAACTATAATAAAGAGCATGGGGAAAGGGGATCCCCCTGACGTAACCCCCGCTTGTGCACGA
TAACATCTCCTAGTAAACCATTGAGCATGACTTGAGTCGTGGATGAGGCCAATAGCCCACAGGT
AACCTCCCTCCAAATCAGCCCAAAGCCTAACTTCTGCAGAACCTCAATAAGGGCCAAGAGACCG
AATCAAATGCCTTGGTAATGTCAAGCTTGAGAAATAATCTAGCCTTTTTTTGTTGATGGAAGGC
TCTAGCAGTTTGCTGCACAAGCATGAAGTTTTCCTGGATAAAACGTCCTTTAATGAAGGCATTC
TGGTTTCATGAGATCATATTATTTAGCCTTTTGGCCAGTCTCGAAGCCAACAACTTGGTACAGA
GCTTGGCAAAACTGTGCACAAGACTAACTGGTCTGAAATCTTTGACTTGATCAGTCCCTTCTTT
CGTAACAGAATAATGTAAGCTATGTTCACTATTCAGTTTTCCAAGATTGCTAAACTTACGGGAC
CCAAATGGCTGAAACAGCCCCCATAACATCCCTCTTGATACTCCAGCAAGATTTATAAAAACGC
CCATTAAAACCATCTGGACCAGGTGCCTTGTCGGAAGGCAGCATTTTAATGGTATCCCAGACCT
CCTGCTCTGTGAATGGGGCATCGAGCTCAGAAAGGTCAAAAGATGGCATGCCAATTTCATCGAG
ATTGATAGTTTGATCCCAGTCCAAACAAGAGCCCATGAGATTGGAGTAGAACTGATGAATCAGG
GAGGCTTTATCTTCATGACCAGTGACGATTCTATCGCCATCAACTAATTTAGCCACAAAGTTCT
TTCTTTTTCGATGACGGGCATGCAAGTGAAACAGCTTGGTATTAGCATCACCTTCCTTGAGCCA
AGAAATCCTCGATCTTAAACATGCTATAGATCGCTTGATGGATGACAACCCCAAAATATGCTTC
TTTAGTCTAGATTTAAGCCAGTTCTCTGCTGGTGTTAACTGTCTTTCATCTTGTGCAACCTCAA
ATTTATGAAGAACCTCCCGCGCTAGTGCCAACTGGGACTGAACATGACCAACCTGCTTGGCACT
CCAAGCATGGAGACCCCTGGCAGTAGCCTTTAGCTTCAAATTCAAGGTTTGAAAAGGGCAATCT
GAAGTTGGAACCGAGCCCCAAGCCGACTGAACAACATCGTAGAAACCCTCTAGCTTAGTCCAAA
ACGCCGCATATCGAACCTATTGTCCTGAACCTGAAGGCCCAAAAGAAGCGGACAATGATCAGTC
TTCAGAAGTTGCGCTTTGAAGCAGGACATTGGGAAAGAGCCCCTCCCAATCAACTGTACAGAAA
ACCCTATCCAGTTTCACCAACACCGGAGCAGCTTGCTGATTTGACCATGTAAATTTGCGGCCAT
GAAGAGGGTATTTCCTTCAACGCGAGATCATCAATCAGTCTTCTCAAACGGGGCCTATTTAAGT
TGGAAGTATTCTTATCTGAAGCTTTATAAATAAGGTTGAAATCCCCTGCCACTATCCAAGGGCC
ATCACAAACTGCCCTAATCTCTATAAGCTCTTGGAGGAATAAAAAAATTCCCCATTATTTTGTG
GCCCATAAACACATGTGAGCCACCAAGTATTCTCTTCAAAAGTAAAAAATTGGACGGAGATACT
ATTATTATCCACTCTTTTTTGACCAATGGGGATCAAGTGTCTTTTCCACGCTACCAGCACCCCG
CCCCTTGCACCTACTGAAGGTAGAGAAATCCAATCACTGAAATCAGCGCCAAGCATAGACAACA
ATTTCCACCTATAGACCTACCCCATTTTAGTTTCTTGCGGACAGATTAAGGGCTTGTTTGGTTC
AGCTTTTTCTGACCTGCTTTTCTGAAAATCTGGCTGTGGGGAGAATCTGACTGTGGGGAGAATC
TGAGTATCATTATAATTACGTGTGGAGGAAGATAAAGTTGTTCATAGGGCTCAGGATCTAGAAA
GTGACGGATTCCTACTATTACAACGACTCAACCGATTATGTGTTTATGTTGATTTTGGATGGTT
TTTGCCCCAACGAATTTTATAGAAGTTGGCTGAAAAGCTGGGCGTTTGGCAGTCCGCAGCAGCT
TTTGGTGGCCAGAAGCTGCCAGAAGCCGAAACAAACAGGGATATCAACCTTGGCAAAAGACACT
AACTCTCTGACTGAATTTTGTCGTGCAGAGGAATTCAACCCTCTAACATTCCAAAACAAAATTT
TTGATGGATCCATTGGACAGAACAAAGAGAAAGAAAACTACGTGCAGGAGCCAAAACTCACTGG
GAGCTGACCACAACAGGAACAGACCACCCAAATAAGGCAGCCAAGGCCTCAACCTGAAACTTTA
GCATAATCTTCCATAGCTTTTTGACTGCAAGCATCGGCATCAAAGATCTCCTTCAAATACTTCA
TAGCTTTATTGACCGTCCTACTCTCCAAATCCTGCAACTTGAATTCAGCATCAGCACCTGCCAC
CCTCCGACTTCTGCGAGGGGGAGCAGCATCACAAGCTCCGCCAGCATTATTCCTGGTAGGCCCA
GTGCTTGTCGGAGTTGGTAGAATGTGAGAAATACGCTTGTACACTTTTCTAAAGGACATTTGTT
TCTCACTCTGGTTGGTGTGGTCAAGCACGTTGTGGTCAGAACTGGATGGATCGGACACCTCAGC
TGCGCCCAATGTTTGCTCTGAAACATCAACCGGGAGATGGAGTGTAGAGCCATGTAGTTCACCC
TCCTAGGCAGCCGGTAACT
Conservation Information
Conserved circRNAs NA
PMCS 0.053828191
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b