Detail information of BGIOSGA009972_circ_g.1


General Information
CircRNA Name BGIOSGA009972_circ_g.1
ID in PlantcircBase osi_circ_005043
Alias 3:32330418|32331429
Organism Oryza sativa ssp. indica
Position chr3: 32330418-32331429  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009972
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA009972-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTTTGACTTATATAGGGCAGAAAATACCTTTTCCTTGTTCTCCTCAGCAATAGCCGGATCAT
CAATTATTGGTTTAGCTGGCATGTAGTAAATTGGTGctccttgtccatttcttgcatgtttgaa
ggaccattacccctccgtgcattccgcgcattctgcatcctttccaactgcctctcaacattag
acatgtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTTGTCCATTTCTTGCATGTTTGAAGGACCATTACCCCTCCGTGCATTCCGCGCATTCTGC
ATCCTTTCCAACTGCCTCTCAACATTAGACATGTACTGTTCTTCGACTTGCTTTTGAAACTGAG
TCAGCTCAGCCCTGCGTTCAGATTTCCATTCTTGAAATGCCTGCAACATTGAATATGAGTTCAT
GATGGATGAAGAGGACAAAGAAAAATCGGTTGCCCCAGATTGTACAAAAAAGGAAGCCCAGGAA
ACTAGCAAGCATATGATGTAAATGGCAAAATGTGAAAGATGAGTATTGACTTGCGGAAGTGGCA
TTCTCTTAATATGTTGCACTTGACCAAGGACTATCCCGTGAAAGGTTAGATCAACATGCTCCAT
ACATGCAAAGGAAGAGCATTGATGCACAGTTATCGAATACAGCCAGTCCCACCCAAACCACCAG
AGCACTTTCAAGTATAAAGCTTTGTAAAATATGACAAATTCATAGCACTGACCACGTACTTTCA
AGTGCCCAGAAATCTTACTGATTCGATATGCATTTTTTGGTAAGATTTTATATCATGTCACCAA
AATAATCATAATGCGGGGGAGGGGGGCAGCAATTTCATAGCTGGCTGATCAGTTAGCCGTTGTA
CTTATTTGATGTTTGATTGAACCATGACAGAGCAGAAACCAACAGGACTGGATATATGCAGGCA
ACTGGCATTCTGATGGTGCCCTATGATGAAATTAGCTATGCCACACAAATACTACAGCAGCAAA
ATAGACAATTTATTATTTGTAGTAGGCACAAGTTTGTCCTCATTGTGTACATCTGTAGTGTTCT
GCCTCCCAAGTTGCATGTAGATGGAGGTGTGTATAAAGGGTCGCAATTCATCCTTCAAAAATTT
GTAAACTTAGCGTTTTTACTTTGACTTATATAGGGCAGAAAATACCTTTTCCTTGTTCTCCTCA
GCAATAGCCGGATCATCAATTATTGGTTTAGCTGGCATGTAGTAAATTGGTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021