Detail information of 2_circ_ag.7


General Information
CircRNA Name 2_circ_ag.7
ID in PlantcircBase ath_circ_012691
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1095663-1097729  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTGTCA
CTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgcacaactttgaactatttcttggatga
tagaatcaacagagctgaggtccttttcccgggggtcgcttgtttcttgatcgctgtttgtttc
ggttccgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGT
CGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCCGCTGTTCATAAATCCAATGCTGCTGATAAC
AAAACCAAACTCCAAAATTTCAAAAGGTTTGAAAAAGATTCATATCTATTGTTGTTTCCGTTTG
GTTTGGTTTGGTACTAATCTTGATCTTGTTTCAGTTTAGAGACTACTTCTTCCTTCGAAATGGA
AACAATTTCTGCAAGCAACGGGTTAACAAAAGGGAAAGCGAAAGAAGGGACTGCAGCTTTTCTC
ATAGAGCTTGAGAAGCAAAGAGCTATAAAGGTTGAAACATACTACTCTTCCTTTACCCTAACAG
ATATAACTGATATGTATATATGTTCTCTGAAGATTCATGATTGGCATTGAGGACAGGTCTTTGG
CAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGTATCTGCTTTTCTCTGTTCTCA
CCTGCATTCAACTTAGCAACAAACGATCAATGGCACACATTAAAACATGGAGTTCCAAAACTAA
ATGTGTACACTGCCTTCTTCTACTTCTCCATCTCTGCATTTGTAGTTGCTCTGATACTTAACAT
CAGATTTCTCTATTGGCCTATACTTGGTCTCCCAAGATCTTCTTTCAAGGCTTATTTGAATGAC
TGGAACGGTCGAGGCTGGTCTTTCTTGGCTGGATTTCTATGTGGATTTGGCAATGGTCTTCAGT
TCATGGGTGGTCAAGCCGCAGGCTATGCAGCTGCAGACGCTGTTCAGGTTTAGACAATAAACAA
ATCCTCTGTTCCATGATTTAAGAGTGAAATATGTTTTACTTATTATGATTTGAATATGTTTCAG
GCACTTCCACTTGTGAGTACATTTTGGGGGATATTGTTGTTTGGAGAATATAGAAGATCATCAA
GAAAAACATATACACTTCTCATCAGTATGCTTCTTATGTTCATAGTCGCTGTCGCGGTTCTTAT
GGCTTCCTCGGGACATAGAAAATGAAATTCACTGAAACTTCTTCAAGTTAAACTGCTAAAAGGA
TCCATTGAAGGAAGAGTTACTTCACCAATGGCTGCAACATGTTCAAGTCTTTGTTTATATTTAA
CCAAAGTGTTTTCTTTGTTGGTTTCTGTCTTAGGGCTTTGCTAACAACAATTGGTTGTATTGTC
TTTGTTTACACATCAGAGAAAGAAAACTATAGTTTATGGCAACTTGAGATTTATTTATTTTATA
GAAAATGGGAAACTAACTTCTTCCTGAATCTGGATCTGCCAATCAAATGAGAGACTAAGTTTTT
TTTCTTCTGTATCTGTTGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATA
AGGTAATCTCTTTCAAGAAACCTAGTCAATAGGGAAATTTAATGGAATATAAGGTTTGAGTTTT
ATAGAGATCTTCTTGTATCAGCATGTGTCTTGTGTTAATGTTCTAAAGAACCTTTCTTAAGACA
ACTAGCTTCATTTTTATCACGAGAGATCAATGATATGATAACAGAAGAATCTCACTTCTTTACT
TTGATGCAGTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAACAATC
ACTTGTATGCTCTTGGCTCTGCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAA
GACGCGGTAGACTTCCTCAACATACTTATCTTGACTACACACTGACAAACCTGTTAGCTGCAGT
TATCATAGCGTTTACACTAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCT
CAAGTCAGTTACACATACATTCATACACATATTTGTTGTTGGTTTTTGAAATGCAAAGTTTTTT
TGTCACAGGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGG
GACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTGTCACTGAAGTCATCACAGCT
AGTATCGCCGTTGTTATCG
Conservation Information
Conserved circRNAs NA
PMCS 0.560053729
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017