Detail information of Os03g0160100_circ_g.2


General Information
CircRNA Name Os03g0160100_circ_g.2
ID in PlantcircBase osa_circ_018052
Alias NA
Organism Oryza sativa
Position chr3: 3205838-3206288  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0160100
Parent gene annotation Mitogen-activated protein kinase kinase kinase (MAPKKK), Disease
resistance, Defense/stress response (Os03t0160100-01)
Parent gene strand +
Alternative splicing Os03g0160100_circ_g.3 Os03g0160100_circ_g.4 Os03g0160100_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0160100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGGATTATGCGTCGACTGCGTCATCCAAATATTGTTCTCTTCATGGGTGCTGTTACTCGTCC
TCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgttcatatggagaggtgtaccgtgctga
ttggaatggaacagtaagaaactgtttgcttttatttccatattgtgccatagaaacattcttc
ccagaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAGTAAGAAACTGTTTGCTTTTATT
TCCATATTGTGCCATAGAAACATTCTTCCCAGAGGTTAAATTCTTTATTGTTTTGCTTCTGTCA
AAAAACATTTTTGTTTATTTGCAGGAAGTAGCTGTCAAGAAATTCTTGGATCAAGATTTCTATG
GTGATGCTTTGGATGAATTCCGGAGTGAAGTAGGTGAAACTATATATATTTTATATATCTTAGA
GCTTTACTGGCTATAGCGTGGATTCATTTATTTGTCATTTTTAATTGATTTTTGCTGCAATGTT
TTGATTTGCCATATACTTTCTTTTTACAAGGTGCGGATTATGCGTCGACTGCGTCATCCAAATA
TTGTTCTCTTCATGGGTGCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCC
AAG
Conservation Information
Conserved circRNAs NA
PMCS 0.244869254
Functional Information
Coding potential Y
Potential coding position 3206028-3205862(+)
3206198-3205862(+)
3205845-3206213(-)
Potential amino acid sequence MVMLWMNSGVKCGLCVDCVIQILFSSWVLLLVLQTYLLYLSIFQGSYGEVYRADWNGTEVAVKK
FLDQDFYGDALDEFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSIVSEYLPRFIWRGVPC*(+)
MRRLRHPNIVLFMGAVTRPPNLSIVSEYLPRFIWRGVPC*(+)
MNLGRYSDTIDKFGGRVTAPMKRTIFG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017