Plant Circular RNA Database

Detail information of Os03g0696300_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0696300_circ_g.2
					
						ID in PlantcircBase
						osa_circ_021095
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 27891477-27893762  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0696300						
					
						Parent gene annotation
						
							Similar to Nuclear transcription factor Y subunit A-1. (Os03t069
6300-01);Similar to nuclear transcription factor Y subunit A-1. 
(Os03t0696300-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0696300_circ_g.1 Os03g0696300_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0696300-01:5
Os03t0696300-02:2

General Information
CircRNA Name	Os03g0696300_circ_g.2
ID in PlantcircBase	osa_circ_021095
Alias	NA
Organism	Oryza sativa
Position	chr3: 27891477-27893762 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0696300
Parent gene annotation	Similar to Nuclear transcription factor Y subunit A-1. (Os03t069 6300-01);Similar to nuclear transcription factor Y subunit A-1. (Os03t0696300-02)
Parent gene strand	+
Alternative splicing	Os03g0696300_circ_g.1 Os03g0696300_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0696300-01:5 Os03t0696300-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAACATGCTATGCGAAGGGCAAGAGGAACGGGTGGACGCTTCCTGAACACAAAGAAAAATGAAG
ATGGTGCTCCCAGTGAGAAAGCCGAACCAAACAAAGgtgagcgagcatggagtcgaggccgggg
ggaaccaacctcgtggagccgagggggcagggcgcgctgccgtccggcataccgatccagcagc
cgtggtgg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGAGCGAGCATGGAGTCGAGGCCGGGGGGAACCAACCTCGTGGAGCCGAGGGGGCAGGGCGCG
CTGCCGTCCGGCATACCGATCCAGCAGCCGTGGTGGACGACCTCCGCCGGGGTCGGGGCGGTGT
CGCCCGCCGTCGTGGCGCCGGGGAGCGGTGCGGGGATCAGCCTGTCGGGCAGGGATGGCGGCGG
CGACGACGCGGCAGAGGAGAGCAGCGATGACTCACGAAGATCAGGGGAGACCAAAGGTATTGTT
CCTTTTCCTTTTTGGAGTGGTTGTAGGTGCTCGGCCCGGTTTTATCTCTGCAATTCGTGCTTGT
TTTGGGAACAAATTGTGCTTGAGTTGAAAAAGGAGACTAATTCAGATGTTCCCAATTAGGAGTG
CAAGAGTGTCCTCTTATGGAGGTTGGAATCGAAAGTAGGCCAACTTTTTGCGTGCTGGTTAAGT
ACGCTATGAGCATGGTAGAACTCTGAAGTCTTGGTCACCTCGTTAATCCTGAAACACTCGTAGG
TGTATCGCTGATCTATCATGCATTAGCGTTGCATATGCAGTGGCTGTGGAGCCTGTCGTGTTGT
GCTGATGTTGTACCATTTGTCACTACTCACTAGATCGTGTTCACTCTGTTGTAGCTGCACTTGC
CTGGTTCTTTGCTTAAGTAATACCATCCTATATACACAGTCATGCTAAGAAAGAATGACTTAAC
TAGAGTAAATTCAGAAAAATGATGATGTATTTTAGTTGTTCTTATTATAGTATCTGACCTTTTT
TTCGCAAAATTTTCTGATCCCTTCGTATGTATCCGCTAATCATAAAATAATTGTTGATTTTAGG
AGTTCCATGCGAAGAGTTTTTATTTTTTTTTTGCATTGGGTCAACGCCAAATGTAAAACATGCT
ACCTCATTTCAGTACGAACTAATATTGTTTGAATGCCAGATGGAAGCACTGATCAAGAAAAGCA
TCATGCAACATCGCAGATGACTGCTTTGGCATCAGACTATTTAACACCATTTTCACAGCTGGAA
CTAAACCAACCAATTGTATGCATTCTTTCCTTGTTGAGTTTCTGTTTCTTATAGATCTTGTTGT
GTCTGCAACTCGTGTATACTTTTCCCTGTCAATGTGCTCATTTTCTCATGCTCATATCGGTCAT
TGTGCAGGCTTCGGCAGCATACCAGTACCCTGACTCTTACTATATGGGCATGGTTGGTCCCTAT
GGACCTCAAGCTATGGTACCTTTTTCCTTGCCAGTTTAAATTATCATAAATCGTCTCCTGCCTG
GTATGCAATCCTTACTCTCTTGGAGTATGAGATGCAATTTTGGATCTGAAATATTGAAGAACTG
CGGATATTGGAGCAGCTGTCTATCACTCTACCTTAGTGATTTCCCACAAAGGGCTGCTGAAATT
GCAGCGCCCTATTTTAGCTTTTTTCTAGTTTTGTATAAACCATATTTTTTTAGACAGCTACTAG
CATTTACATTAGGAAACACCAATAGCCAGAGGGATTAAGATCAAGAAGACAGACATCAGGCATG
GGCACAGAACTGCACAACTGATAGAGTAACAAGACCATGGATACACCTGAACCAAAAACGGACT
TTGTGATTACCAGAAATTTGGTTGCTTTCGTAGTATATGGAAGCCTGAAAGATCTGAATGCTCA
AATGTCTTTAGGTTGACTCCACCACTTTGGCTAGACTTAACGTGGTTTAACTTTTATAAAGGTT
GAATATTTACTAAAACTGTCCTTAGAGAGTTGCTGAACTTTCTGCATTTTTGTTTCCTGCAGTC
CGCACAGACTCATTTCCAGCTACCTGGATTAACTCACTCTCGTATGCCGTTGCCTCTTGAAATA
TCTGAGGAGCCTGTTTATGTAAATGCTAAGCAATATCATGGAATTTTAAGACGGAGGCAGTCAC
GTGCGAAGGCTGAACTTGAGAAAAAAGTTGTTAAATCAAGAAAGGTTAGTGAAGTTATATCTTG
GTTCTCGCCTCCTGCTAATTCTGGAATTTCCTCCTCTAGATCGAGTGTTGAGTTTTCAGGATGA
TCCTTCCGTGTCCTGGTTGGATGTCTCCCATTTACTGAAGTGTAGAGCTCGATAATTTGTTAAG
CACTGGCAGTGTTCTGTAGTGATAGCGGAATTTGGTGTTTGATATTGCAGCCCTATCTTCATGA
GTCTCGTCATCAACATGCTATGCGAAGGGCAAGAGGAACGGGTGGACGCTTCCTGAACACAAAG
AAAAATGAAGATGGTGCTCCCAGTGAGAAAGCCGAACCAAACAAAG
						
					

			
		

Sequences
Splice junction sequence	CAACATGCTATGCGAAGGGCAAGAGGAACGGGTGGACGCTTCCTGAACACAAAGAAAAATGAAG ATGGTGCTCCCAGTGAGAAAGCCGAACCAAACAAAGgtgagcgagcatggagtcgaggccgggg ggaaccaacctcgtggagccgagggggcagggcgcgctgccgtccggcataccgatccagcagc cgtggtgg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGAGCGAGCATGGAGTCGAGGCCGGGGGGAACCAACCTCGTGGAGCCGAGGGGGCAGGGCGCG CTGCCGTCCGGCATACCGATCCAGCAGCCGTGGTGGACGACCTCCGCCGGGGTCGGGGCGGTGT CGCCCGCCGTCGTGGCGCCGGGGAGCGGTGCGGGGATCAGCCTGTCGGGCAGGGATGGCGGCGG CGACGACGCGGCAGAGGAGAGCAGCGATGACTCACGAAGATCAGGGGAGACCAAAGGTATTGTT CCTTTTCCTTTTTGGAGTGGTTGTAGGTGCTCGGCCCGGTTTTATCTCTGCAATTCGTGCTTGT TTTGGGAACAAATTGTGCTTGAGTTGAAAAAGGAGACTAATTCAGATGTTCCCAATTAGGAGTG CAAGAGTGTCCTCTTATGGAGGTTGGAATCGAAAGTAGGCCAACTTTTTGCGTGCTGGTTAAGT ACGCTATGAGCATGGTAGAACTCTGAAGTCTTGGTCACCTCGTTAATCCTGAAACACTCGTAGG TGTATCGCTGATCTATCATGCATTAGCGTTGCATATGCAGTGGCTGTGGAGCCTGTCGTGTTGT GCTGATGTTGTACCATTTGTCACTACTCACTAGATCGTGTTCACTCTGTTGTAGCTGCACTTGC CTGGTTCTTTGCTTAAGTAATACCATCCTATATACACAGTCATGCTAAGAAAGAATGACTTAAC TAGAGTAAATTCAGAAAAATGATGATGTATTTTAGTTGTTCTTATTATAGTATCTGACCTTTTT TTCGCAAAATTTTCTGATCCCTTCGTATGTATCCGCTAATCATAAAATAATTGTTGATTTTAGG AGTTCCATGCGAAGAGTTTTTATTTTTTTTTTGCATTGGGTCAACGCCAAATGTAAAACATGCT ACCTCATTTCAGTACGAACTAATATTGTTTGAATGCCAGATGGAAGCACTGATCAAGAAAAGCA TCATGCAACATCGCAGATGACTGCTTTGGCATCAGACTATTTAACACCATTTTCACAGCTGGAA CTAAACCAACCAATTGTATGCATTCTTTCCTTGTTGAGTTTCTGTTTCTTATAGATCTTGTTGT GTCTGCAACTCGTGTATACTTTTCCCTGTCAATGTGCTCATTTTCTCATGCTCATATCGGTCAT TGTGCAGGCTTCGGCAGCATACCAGTACCCTGACTCTTACTATATGGGCATGGTTGGTCCCTAT GGACCTCAAGCTATGGTACCTTTTTCCTTGCCAGTTTAAATTATCATAAATCGTCTCCTGCCTG GTATGCAATCCTTACTCTCTTGGAGTATGAGATGCAATTTTGGATCTGAAATATTGAAGAACTG CGGATATTGGAGCAGCTGTCTATCACTCTACCTTAGTGATTTCCCACAAAGGGCTGCTGAAATT GCAGCGCCCTATTTTAGCTTTTTTCTAGTTTTGTATAAACCATATTTTTTTAGACAGCTACTAG CATTTACATTAGGAAACACCAATAGCCAGAGGGATTAAGATCAAGAAGACAGACATCAGGCATG GGCACAGAACTGCACAACTGATAGAGTAACAAGACCATGGATACACCTGAACCAAAAACGGACT TTGTGATTACCAGAAATTTGGTTGCTTTCGTAGTATATGGAAGCCTGAAAGATCTGAATGCTCA AATGTCTTTAGGTTGACTCCACCACTTTGGCTAGACTTAACGTGGTTTAACTTTTATAAAGGTT GAATATTTACTAAAACTGTCCTTAGAGAGTTGCTGAACTTTCTGCATTTTTGTTTCCTGCAGTC CGCACAGACTCATTTCCAGCTACCTGGATTAACTCACTCTCGTATGCCGTTGCCTCTTGAAATA TCTGAGGAGCCTGTTTATGTAAATGCTAAGCAATATCATGGAATTTTAAGACGGAGGCAGTCAC GTGCGAAGGCTGAACTTGAGAAAAAAGTTGTTAAATCAAGAAAGGTTAGTGAAGTTATATCTTG GTTCTCGCCTCCTGCTAATTCTGGAATTTCCTCCTCTAGATCGAGTGTTGAGTTTTCAGGATGA TCCTTCCGTGTCCTGGTTGGATGTCTCCCATTTACTGAAGTGTAGAGCTCGATAATTTGTTAAG CACTGGCAGTGTTCTGTAGTGATAGCGGAATTTGGTGTTTGATATTGCAGCCCTATCTTCATGA GTCTCGTCATCAACATGCTATGCGAAGGGCAAGAGGAACGGGTGGACGCTTCCTGAACACAAAG AAAAATGAAGATGGTGCTCCCAGTGAGAAAGCCGAACCAAACAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005034* 						
					
						PMCS
						0.218108687

Conservation Information
Conserved circRNAs	osi_circ_005034*
PMCS	0.218108687

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27891488-27892453(+)
27893722-27891695(+)
27891556-27893672(-)
						
						Potential amino acid sequence
						
							MESRPGGTNLVEPRGQGALPSGIPIQQPWWTTSAGVGAVSPAVVAPGSGAGISLSGRDGGGDDA
AEESSDDSRRSGETKDGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMG
MVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQSRAKAELEKKVV
KSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAEPNKGERAWSRGRGEPTSWSRGG
RARCRPAYRSSSRGGRPPPGSGRCRPPSWRRGAVRGSACRAGMAAATTRQRRAAMTHEDQGRPK
MEALIKKSIMQHRR*(+)
MKMVLPVRKPNQTKVSEHGVEAGGNQPRGAEGAGRAAVRHTDPAAVVDDLRRGRGGVARRRGAG
ERCGDQPVGQGWRRRRRGRGEQR*(+)
MPDGSAPCPLGSTRLVPPGLDSMLAHLCLVRLSHWEHHLHFSLCSGSVHPFLLPFA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27891488-27892453(+) 27893722-27891695(+) 27891556-27893672(-)
Potential amino acid sequence	MESRPGGTNLVEPRGQGALPSGIPIQQPWWTTSAGVGAVSPAVVAPGSGAGISLSGRDGGGDDA AEESSDDSRRSGETKDGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMG MVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQSRAKAELEKKVV KSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAEPNKGERAWSRGRGEPTSWSRGG RARCRPAYRSSSRGGRPPPGSGRCRPPSWRRGAVRGSACRAGMAAATTRQRRAAMTHEDQGRPK MEALIKKSIMQHRR(+) MKMVLPVRKPNQTKVSEHGVEAGGNQPRGAEGAGRAAVRHTDPAAVVDDLRRGRGGVARRRGAG ERCGDQPVGQGWRRRRRGRGEQR(+) MPDGSAPCPLGSTRLVPPGLDSMLAHLCLVRLSHWEHHLHFSLCSGSVHPFLLPFA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0696300_circ_g.2

Address

Any questions?

Supported by