Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0803800_circ_g.1 |
ID in PlantcircBase | osa_circ_022324 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 33541363-33542892 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0803800 |
Parent gene annotation |
Conserved hypothetical protein. (Os03t0803800-01) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0803800-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_013779 |
PMCS | 0.154534837 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
33542880-33541441(+) 33542884-33541806(+) 33542669-33541365(-) |
Potential amino acid sequence |
MNVFTATFRKPMPGYSEKNFIIFFFSFGVSA*(+) MYSRQHLGSQCQGTRRKTLLFSSSPLVFPHSNLLATLKPVELDVHGMLPSRSL*(+) MDNSKKKITVENFLDYLAEQKSVSGKENLGVRIQSLRLHISFLRQARRTEVSAVKVQGNTSGSG DGSCEKDLVKNRKFHLSKQALDERFSAITSRIKKLPGINKHIHFDSTDDETDGDSSSEGDAVDN SESKTGSAAIDNKDVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKESSKKGYTREKR KSEENGSPTSSCKRPKKKQKVQMQKHELSPNCFLSIGKLEKFITTWKEACREHPVQQVLELLAN YYAETPKEKKKIIKFFSEYPGIGFLNVAVNTFIHCYVAARKIVSVYDLESEICKNESIGQFEEL GLGPFLQHPLVAHYFSVPADLSLVPKLSSDEIINWLQKFMDNSKKKITVENFLDYLAEQKSVSG KENLGVRIQSLRLHISFLRQARRTEVSAVKVQGNTSGSGDGSCEKDLVKNRKFHLSKQALDERF SAITSRIKKLPGINKHIHFDSTDDETDGDSSSEGDAVDNSESKTGSAAIDNKDVDKRVSSCPYP SKTEEMERLGLKSETSKKPPLDSSKVKESSKKGYTREKRKSEENGSPTSSCKRPKKKQKVQMQK HELSPNCFLSIGKLEKFITTWKEACREHPVQQVLELLANYYAETPKEKKKIIKFFSEYPGIGFL NVAVNTFIHCYVAARKIVSVYDLESEICKNESIGQFEELGLGPFLQHPLVAHYFSVPADLSLVP KLSSDEIINWLQKFMDNSKKKITVENFLDYLAEQKSVSGKENLGVRIQSLRLHISFLRQARRTE VSAVKVQGNTSGSGDGSCEKDLVKNRKFHLSKQALDERFSAITSRIKKLPGINKHIHFDSTDDE TDGDSSSEGDAVDNSESKTGSAAIDNKDVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSK VKESSKKGYTREKRKSEENGSPTSSCKRPKKKQKVQMQKHELSPNCFLSIGKLEKFITTWKEAC REHPVQQVLELLANYYAETPKEKKKIIKFFSEYPGIGFLNVAVNTFIHCYVAARKIVSVYDLES EICKNESIGQFEELGLGPFLQHPLVAHYFSVPADLSLVPKLSSDEIINWLQKFMDNSKKKITVE NFLDYLAEQKSVSGKENLGVRIQSLRLHISFLRQARRTEVSAVKVQGNTSGSGDGSCEKDLVKN RKFHLSKQALDERFSAITSRIKKLPGINKHIHFDSTDDETDGDSSSEGDAVDNSESKTGSAAID NKDVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKESSKKGYTREKRKSEENGSPTSS CKRPKKKQKVQMQKHELSPNCFLSIGKLEKFITTWKEACREHPVQQVLELLANYYAETPKEKKK IIKFFSEYPGIGFLNVA(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |