Detail information of Os03g0803800_circ_g.1


General Information
CircRNA Name Os03g0803800_circ_g.1
ID in PlantcircBase osa_circ_022324
Alias NA
Organism Oryza sativa
Position chr3: 33541363-33542892  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0803800
Parent gene annotation Conserved hypothetical protein. (Os03t0803800-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0803800-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAACTGTCCAATGCTCTCATTTTTGCATATCTCAGACTCTAAATCATAAACTGAAACAATTTT
CCTTGCTGCAACATAGCAATGGATGAATGTATTCACggcaacatttaggaagccaatgccaggg
tactcggagaaaaactttattattttcttcttctcctttggtgtttccgcatagtaatttgcta
gcaactct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCAACATTTAGGAAGCCAATGCCAGGGTACTCGGAGAAAAACTTTATTATTTTCTTCTTCTCC
TTTGGTGTTTCCGCATAGTAATTTGCTAGCAACTCTAAAACCTTCATGGTGAAATGCAAGACAA
TTTAGTTTAGAAATTGGAAATGTCTAGACTAAACACACTTACCTCTTTCTAAACAATCAATGAT
GTGTTTTCAAATAAGTAATGAAATGAAGTACATTGTACGACCAAACCATCAAACAAGTATGACA
AATATCACAAATAAATCGAAAGAAACTTGTATATCAGTACATAGAGCTACATAATTATGGTGCC
TGTTTGTTTCAAACAAATATTGGCATCATTCAGGTTAACAATTACAGAAAGAAAACAAATATGA
TCATGAATTAGCATACCTGTTGAACTGGATGTTCACGGCATGCTTCCTTCCAGGTCGTTATGAA
TTTCTCCAACTTACCTATACTCAAGAAACAATTAGGTGATAACTCATGCTTTTGCATTTGAACC
TTTTGCTTCTTCTTGGGCCGTTTGCATGAAGAGGTGGGGCTCCCATTCTCTTCAGATTTCCTTT
TTTCTCTCGTATAACCCTTTTTACTACTCTCTTTTACCTTGCTACTATCCAAAGGTGGTTTTTT
ACTCGTTTCAGACTTTAAGCCAAGACGCTCCATTTCTTCTGTTTTTGAAGGATATGGACAGCTA
CTAACACGCTTATCAACATCCTTGTTATCAATAGCAGCAGAACCAGTTTTACTCTCACTGTTAT
CAACTGCATCACCCTCAGAACTAGAATCACCATCAGTTTCATCATCGGTTGAATCAAAATGGAT
GTGCTTATTGATACCTGGTAATTTCTTTATACGACTAGTTATAGCACTGAACCTCTCATCCAAT
GCCTGTTTGCTCAAATGAAATTTTCTATTTTTCACCAAATCCTTCTCACAACTACCATCACCTG
AGCCACTGGTGTTGCCTTGAACTTTAACAGCAGACACTTCAGTTCTCCTGGCCTGCCGGAGAAA
GGAAATATGCAACCTACAAAATCTCCCAAATTAGAAAAAGAAGAAAATTCTGAAGAAAGACCAA
AGGAAACTAGTTATTTCTATTTCAACCTTGAAGTATGCACCACTAAAAATGTTGGACGCATGGG
GGAAGTCAATAAATAAGTACGTGCTCAATTCTAACATTCATACCTCAAGCTTTGTATTCGTACA
CCAAGGTTTTCCTTTCCAGAGACTGACTTTTGCTCCGCAAGATAATCCAAGAAGTTTTCCACTG
TAATTTTCTTTTTAGAGTTGTCCATAAACTTCTGAAGCCAATTTATAATCTCGTCACTACTAAG
CTTAGGTACCAAGGACAAATCGGCAGGTACTGAAAAATAATGTGCAACAAGTGGATGCTGAAGA
AAAGGCCCCAACCCCAACTCTTCAAACTGTCCAATGCTCTCATTTTTGCATATCTCAGACTCTA
AATCATAAACTGAAACAATTTTCCTTGCTGCAACATAGCAATGGATGAATGTATTCAC
Conservation Information
Conserved circRNAs osi_circ_013779
PMCS 0.154534837
Functional Information
Coding potential Y
Potential coding position 33542880-33541441(+)
33542884-33541806(+)
33542669-33541365(-)
Potential amino acid sequence MNVFTATFRKPMPGYSEKNFIIFFFSFGVSA*(+)
MYSRQHLGSQCQGTRRKTLLFSSSPLVFPHSNLLATLKPVELDVHGMLPSRSL*(+)
MDNSKKKITVENFLDYLAEQKSVSGKENLGVRIQSLRLHISFLRQARRTEVSAVKVQGNTSGSG
DGSCEKDLVKNRKFHLSKQALDERFSAITSRIKKLPGINKHIHFDSTDDETDGDSSSEGDAVDN
SESKTGSAAIDNKDVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKESSKKGYTREKR
KSEENGSPTSSCKRPKKKQKVQMQKHELSPNCFLSIGKLEKFITTWKEACREHPVQQVLELLAN
YYAETPKEKKKIIKFFSEYPGIGFLNVAVNTFIHCYVAARKIVSVYDLESEICKNESIGQFEEL
GLGPFLQHPLVAHYFSVPADLSLVPKLSSDEIINWLQKFMDNSKKKITVENFLDYLAEQKSVSG
KENLGVRIQSLRLHISFLRQARRTEVSAVKVQGNTSGSGDGSCEKDLVKNRKFHLSKQALDERF
SAITSRIKKLPGINKHIHFDSTDDETDGDSSSEGDAVDNSESKTGSAAIDNKDVDKRVSSCPYP
SKTEEMERLGLKSETSKKPPLDSSKVKESSKKGYTREKRKSEENGSPTSSCKRPKKKQKVQMQK
HELSPNCFLSIGKLEKFITTWKEACREHPVQQVLELLANYYAETPKEKKKIIKFFSEYPGIGFL
NVAVNTFIHCYVAARKIVSVYDLESEICKNESIGQFEELGLGPFLQHPLVAHYFSVPADLSLVP
KLSSDEIINWLQKFMDNSKKKITVENFLDYLAEQKSVSGKENLGVRIQSLRLHISFLRQARRTE
VSAVKVQGNTSGSGDGSCEKDLVKNRKFHLSKQALDERFSAITSRIKKLPGINKHIHFDSTDDE
TDGDSSSEGDAVDNSESKTGSAAIDNKDVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSK
VKESSKKGYTREKRKSEENGSPTSSCKRPKKKQKVQMQKHELSPNCFLSIGKLEKFITTWKEAC
REHPVQQVLELLANYYAETPKEKKKIIKFFSEYPGIGFLNVAVNTFIHCYVAARKIVSVYDLES
EICKNESIGQFEELGLGPFLQHPLVAHYFSVPADLSLVPKLSSDEIINWLQKFMDNSKKKITVE
NFLDYLAEQKSVSGKENLGVRIQSLRLHISFLRQARRTEVSAVKVQGNTSGSGDGSCEKDLVKN
RKFHLSKQALDERFSAITSRIKKLPGINKHIHFDSTDDETDGDSSSEGDAVDNSESKTGSAAID
NKDVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKESSKKGYTREKRKSEENGSPTSS
CKRPKKKQKVQMQKHELSPNCFLSIGKLEKFITTWKEACREHPVQQVLELLANYYAETPKEKKK
IIKFFSEYPGIGFLNVA(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017