Plant Circular RNA Database

Detail information of Os03g0392600_circ_ag.2

			
						 General Information
					
						CircRNA Name
						Os03g0392600_circ_ag.2
					
						ID in PlantcircBase
						osa_circ_020164
					
						Alias
						Os_ciR644
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 15767129-15801698  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os03g0392600_circ_ag.1 Os03g0392600_circ_ag.3 Os03g0393700_circ_g.1 Os03g0393700_circ_g.2 						
					
						Support reads
						50
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os03g0392600_circ_ag.2
ID in PlantcircBase	osa_circ_020164
Alias	Os_ciR644
Organism	Oryza sativa
Position	chr3: 15767129-15801698 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os03g0392600_circ_ag.1 Os03g0392600_circ_ag.3 Os03g0393700_circ_g.1 Os03g0393700_circ_g.2
Support reads	50
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGTACCGGGCCGCCCTGAAGCCAGAGGATGGTCGGCCATGGCTTCCCCGGCGACGACGCACGAT
GCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCTttggccggacttggacgtatccccagcg
ctcggagccgtcgttggtgccgccggagatggcagcgccgccgtcgagctgaagaagggtgatg
aggcagag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 151
Transcript exons: 15767129-15767243,15801663-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGGCGGGCTCCTGTA
GTACCACCAGAACAGGTGCGCCT
Transcript length: 154
Transcript exons: 15767129-15767251,15801668-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTCTCCT
GTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 165
Transcript exons: 15767129-15767260,15801666-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCAGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 169
Transcript exons: 15767129-15767259,15801661-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 172
Transcript exons: 15767129-15767264,15801663-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 177
Transcript exons: 15767129-15767267,15801661-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 185
Transcript exons: 15767129-15767276,15801662-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGTGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 186
Transcript exons: 15767129-15767276,15801661-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGATGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 186
Transcript exons: 15767129-15767279,15801664-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAACGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 190
Transcript exons: 15767129-15767287,15801668-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGACTCCTGTAGTACCACCAGAACAGGTGCGCCT
Transcript length: 196
Transcript exons: 15767129-15767286,15801661-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGATGCGGGCTCCTGTAGTACCACCAGAACAGGTGC
GCCT
Transcript length: 198
Transcript exons: 15767129-15767286,15801659-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGCGATGCGGGCTCCTGTAGTACCACCAGAACAGGT
GCGCCT
Transcript length: 199
Transcript exons: 15767129-15767287,15801659-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGACGATGCGGGCTCCTGTAGTACCACCAGAACAGG
TGCGCCT
Transcript length: 200
Transcript exons: 15767129-15767289,15801660-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGAACGATGCGGGCTCCTGTAGTACCACCAGAACAG
GTGCGCCT
Transcript length: 202
Transcript exons: 15767129-15767294,15801663-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGCGGGCTCCTGTAGTACCACCAGAAC
AGGTGCGCCT
Transcript length: 203
Transcript exons: 15767129-15767296,15801664-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGCCGGGCTCCTGTAGTACCACCAGAA
CAGGTGCGCCT
Transcript length: 204
Transcript exons: 15767129-15767295,15801662-15801698
TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC
GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG
TCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGTGCGGGCTCCTGTAGTACCACCAGA
ACAGGTGCGCCT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CGTACCGGGCCGCCCTGAAGCCAGAGGATGGTCGGCCATGGCTTCCCCGGCGACGACGCACGAT GCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCTttggccggacttggacgtatccccagcg ctcggagccgtcgttggtgccgccggagatggcagcgccgccgtcgagctgaagaagggtgatg aggcagag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 151 Transcript exons: 15767129-15767243,15801663-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGGCGGGCTCCTGTA GTACCACCAGAACAGGTGCGCCT Transcript length: 154 Transcript exons: 15767129-15767251,15801668-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTCTCCT GTAGTACCACCAGAACAGGTGCGCCT Transcript length: 165 Transcript exons: 15767129-15767260,15801666-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCAGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 169 Transcript exons: 15767129-15767259,15801661-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 172 Transcript exons: 15767129-15767264,15801663-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 177 Transcript exons: 15767129-15767267,15801661-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 185 Transcript exons: 15767129-15767276,15801662-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGTGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 186 Transcript exons: 15767129-15767276,15801661-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGATGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 186 Transcript exons: 15767129-15767279,15801664-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAACGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 190 Transcript exons: 15767129-15767287,15801668-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGACTCCTGTAGTACCACCAGAACAGGTGCGCCT Transcript length: 196 Transcript exons: 15767129-15767286,15801661-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGATGCGGGCTCCTGTAGTACCACCAGAACAGGTGC GCCT Transcript length: 198 Transcript exons: 15767129-15767286,15801659-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGCGATGCGGGCTCCTGTAGTACCACCAGAACAGGT GCGCCT Transcript length: 199 Transcript exons: 15767129-15767287,15801659-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGACGATGCGGGCTCCTGTAGTACCACCAGAACAGG TGCGCCT Transcript length: 200 Transcript exons: 15767129-15767289,15801660-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGAACGATGCGGGCTCCTGTAGTACCACCAGAACAG GTGCGCCT Transcript length: 202 Transcript exons: 15767129-15767294,15801663-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGCGGGCTCCTGTAGTACCACCAGAAC AGGTGCGCCT Transcript length: 203 Transcript exons: 15767129-15767296,15801664-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGCCGGGCTCCTGTAGTACCACCAGAA CAGGTGCGCCT Transcript length: 204 Transcript exons: 15767129-15767295,15801662-15801698 TTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGC GCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTG TCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGTGCGGGCTCCTGTAGTACCACCAGA ACAGGTGCGCCT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.729691697

Conservation Information
Conserved circRNAs	NA
PMCS	0.729691697

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os03g0392600_circ_ag.2

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