Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07705_circ_g.4 |
ID in PlantcircBase | ath_circ_001183 |
Alias | Ath_circ_FC0233 |
Organism | Arabidpsis thaliana |
Position | chr1: 2384313-2384997 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder |
Parent gene | AT1G07705 |
Parent gene annotation |
NOT2 / NOT3 / NOT5 family |
Parent gene strand | + |
Alternative splicing | AT1G07705_circ_g.3 |
Support reads | 11 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G07705.2:2 AT1G07705.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.245216941 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2384313-2384994(+) |
Potential amino acid sequence |
MGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVSLHGSDIFSSSHPPYHSQTGGAPGIGLRSMN SANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAASQPFRDVGLKSMQSTQSNPDRFGLLGLLS VIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNPPPL HMGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVSLHGSDIFSSSHPPYHSQTGGAPGIGLRSM NSANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAASQPFRDVGLKSMQSTQSNPDRFGLLGLL SVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNPPP LHMGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVSLHGSDIFSSSHPPYHSQTGGAPGIGLRS MNSANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAASQPFRDVGLKSMQSTQSNPDRFGLLGL LSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNPP PLHMGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVSLHGSDIFSSSHPPYHSQTGGAPGIGLR SMNSANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAASQPFRDVGLKSMQSTQSNPDRFGLLG LLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNP PPLH(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |