Detail information of BGIOSGA016977_circ_igg.1


General Information
CircRNA Name BGIOSGA016977_circ_igg.1
ID in PlantcircBase osi_circ_014699
Alias Chr04:29826347_29829039(MH63RS2), Chr04:29869277_29871970(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27986823-27989516  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGTGCGAAGGCAAGGACGTCCTTTAGTCTTTTTGGTATCTTCAGATTTCAGACCCTCGACTC
CATTGCTTTCTGTTAACCGCGTTTTTTTTAGCTAAGggctgggtcaatagaaggcaaggtgatt
gaaataggactgacttctacggaattgatgaatccagaacaacttcctgtcactgtacccaatt
ctctgttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTGGGTCAATAGAAGGCAAGGTGATTGAAATAGGACTGACTTCTACGGAATTGATGAATCCA
GAACAACTTCCTGTCACTGTACCCAATTCTCTGTTCTCCAGCCAGGTATCCTATGGCTTGCATT
ACTGGAAACCTTTTGAATCACATATTTGCATGTACATAGGAGTGACATGTAATATGCTTTTCTG
AACCACCTTGACATTTCATTTTGTTTGTCCTATCCTTACTGTTTTGGTGTGCGCGCGCGCACGC
ACACACACAAAATGAATGTTTTCCAGGCAGTAACTATAGTAATGTCCTGTAATTTTATTGGAGA
TTGATTCTTCAAGGAACCTAGGCACTTTTGATATTTAGAAGTTTTATCATAGTATGATGCAATT
TAACCTGAAAGCAGATTTCACTACTCTGGAGTAAATGATAAGCAAAATACCTAGGAGGCTAGGA
CAAGTGAAAACGAGATGAAATCTACTACTTCCTCCGTCCCAAAATATAACAACTTTTAGCCCTC
AAGATTTGTCCCAAAATATAACAACTTCTCCACCAACATTCTCTTCCTAACCAATCACAACTTT
CCACCATTCACTTTTCCCACCTACCACCACTACTTAACCAATCACAACCCTCCACCATTTACTT
CTACCTACTTTCTTAATAACTGTGTCCAACTATAGAAATGCTTATATTCTGGGACGGAGGGAGT
AACATTTTCAATGGTTTGCACTATGCACCGTGAACCATGGTTCACAAATCACAATTTGTAGATT
CGTTAGCTGATACAGGGGTCTTTTACTGCCAAAGATCATCATCATTCGTTTTATCACTAAAATA
TGAAACTTATACCTTGTTCAAATTTTAAATTTTAGTCTCAGTTGGGATGGATTAAAATAAATAA
TCTTTGGAGCATTTAAATCACTTGAAACTTGGAATGATGTTTTTCTATTTAAATTTTGGAGGAC
AGAAAGCCCTCAATGCTTTGTTGCGTTAATTAACTAAAATATTACTAAAAAGATGCTGATTGTT
CTGTATTTCAAGAATAAGCCTGTGAGGATTTATTCAGCGAGTTTCCCTGCATTTCTGTTTTCTG
GCCTTCTCGGTAGGGTTAGCAGAAGCGTACCCTGTATCCTGATATTACTAATAACTTGCAGGTG
ATAGTGAACAGATCACGAGCTAAATGGCGATCCAATGTGACAAAGATTCCTATTAGAATTGAGG
ATATTGAAAAGGTTCCTGCCATATCAGAGGAGATAAAAGTTATGTTAAGGTCCAACCCAAAGGT
TGTCTTAGACTCAGAAGCACCAGCTCCTTATTGTTATCTTTCAAGATTGGAAAGTTCATATGGA
GAGCTCACCATTGGATGCAACCTCACGAAAATGGTACATTAGCTCTGTTTGTTTTACAGTTATG
ATATGTCATGTATTTTGATAATCCATTTGTAGCTATATGTTACACATTTTGTTGCTTTTTGGCA
TGTTTTGGATAACAATGTGTCTTCAGCATAACTTTTGGTCTGTACTTACCAACATCACAGCGTC
ATGTCTGGTCCATCCAAATTGGTAGTCGTCTGTTGCTGTTCTAGAGATAGGGCTGCAATAAAAT
TGAGGTTACCTAAATGTGATAATTCCATCGGAATCAACACCTTTAGCATACCATAAATTGATGG
TGTTCTTATTCTTACAGGATTTACGTCCATTGTGTAATGTTGAGTCCGTTCAACTTATGAGAAC
TTGTTTACTAAGTAGGAGAGCAGCCAAAATTACCTATCGCTGACTCTCTATGATTCGTCATAAT
TCTTTGTGTATTACAGACAAAGGATGAGTGGCTGTCTACAACACAAGGCATTCTTCTGGAGGCT
GCTAAGATTATCAAGTTACATGGCGTTGAACTGGGAAGCACCACGCAGTGCTGCTGATTACGGT
GCTTTTGGAAGTTCTAAGTAGGTAAGTGCAATTAATTTAGCTGTTGGGCCATGCAGATAATACT
TTCCAAAACACAGTTCCGGCTGTTATAAGTTCACATCGAAACTGCTACTATGTTAAAAACACGT
AGTTGTTCCCACTGTAGTTGTTCCACTTCTGTTCCCACATTACGTTCTTCCATTCCATTTGTCA
TTTAGCATCCGGCAGTTTCAAAACGAGTTTTTACATTTGAGTGCATATTTGTTCCCAAGTTTGC
TTATTGTCATATCTTCTTTCTCTGTCTACTCCAGACTATTAGATGGTATTTGCATGTCAAGACA
TGTGTCATTTTCTTCGGTATGTTGATGCATGGGCTACCCTTAATAAGCTTATAACTAATAGTGT
ATTGTGGCAAACGGGGTTAGATGAAGATTTTCCCACTAAATGTGTAGATAAAAAACGTTCCACT
GCATATATTCAGCCATACTTTGTGAGAACCGCTACACCTGCTTAAAAAATTCTTACAAACAAAA
CTCCTACCCGTTACATCAGCGTTTGTATGAGTTTTGTAAGAGTAACCTTTCCTTGATATATTTG
TTACAGTTTTGAGTATATCTTCAGTTTTGTAAATTTGCAGGTGAATTACGTTAGTCACACTCAA
CAGAAGTACATAGGTTGGTGGCTTTGGAACACTTCTAGTGCGAAGGCAAGGACGTCCTTTAGTC
TTTTTGGTATCTTCAGATTTCAGACCCTCGACTCCATTGCTTTCTGTTAACCGCGTTTTTTTTA
GCTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021