Detail information of BGIOSGA012647_circ_g.1


General Information
CircRNA Name BGIOSGA012647_circ_g.1
ID in PlantcircBase osi_circ_013044
Alias Chr03:14492142_14492525(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 15243953-15244336  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA012647
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA012647-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGCATTTCCAGCCCACTTCTTGATTTGATGTGTTCTCATTCAGGATGAAGCTGGGACTGCAG
CAATTAAGACAGTTGAACTTGACACCATGCTCGGAGggattcaagattttaagccagttccttt
gccaaaagcagattacggtaaattttacaatggagattcatatatagttctccaggtgattttt
tttatatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACGGTAAATTTTACAATGGAGA
TTCATATATAGTTCTCCAGGTGATTTTTTTTATATTTACATTTTAGAAGAATCTTTCTGTTATC
TCCACTATGGAAAGTTTCAATGATCTGTTCATTTTGTTTTGTAGACGACTTGCAGCAAAGGTGG
TGGCGCCTATCTTTTTGACATCCACTTTTGGATTGGGAAAGATTCTAGTCAAGTACATTTTCTC
TAACATCTCAAGTTTCATGTACTGATAAATGGCATTTCCAGCCCACTTCTTGATTTGATGTGTT
CTCATTCAGGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021