Detail information of Os04g0620700_circ_g.11


General Information
CircRNA Name Os04g0620700_circ_g.11
ID in PlantcircBase osa_circ_025354
Alias NA
Organism Oryza sativa
Position chr4: 31548695-31548995  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0620700
Parent gene annotation Nucleolin-like protein, Salt stress response (Os04t0620700-01);H
ypothetical conserved gene. (Os04t0620700-02)
Parent gene strand +
Alternative splicing Os04g0620700_circ_g.1 Os04g0620700_circ_g.2 Os04g0620700_circ_g.3 Os04g0620700_circ_g.4 Os04g0620700_circ_g.5 Os04g0620700_circ_g.6 Os04g0620700_circ_g.7 Os04g0620700_circ_g.8 Os04g0620700_circ_g.9 Os04g0620700_circ_g.10 Os04g0620700_circ_g.12 Os04g0620700_circ_g.13 Os04g0620700_circ_g.14 Os04g0620700_circ_g.15 Os04g0620700_circ_g.16
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0620700-01:2
Os04t0620700-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGAAAGAAATCAGCAGTGATGACGAAAGTGATGAAGATGACAGTTCTGATGAAAGCTCTGAT
GAGGATGTTAAGCAAAAACAAACTCAAGCTAAGAAGtccaaggatgaatctgaagatagttctg
atgagagttctgaggaaagtggtgatgaacctccgcaaaagaagattaaggtacttatttttct
ttttgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCAAGGATGAATCTGAAGATAGTTCTGATGAGAGTTCTGAGGAAAGTGGTGATGAACCTCCGC
AAAAGAAGATTAAGGTACTTATTTTTCTTTTTGTTTTGCACATTTTAATGTTTTTTTATTCATG
ATTACAATTGCTATCTCTTCGGACTCCAGGATTCTACAACTTCTGGTACTACCAAGCCTTCCCC
TAAGGCTACCAAGAAAGAAATCAGCAGTGATGACGAAAGTGATGAAGATGACAGTTCTGATGAA
AGCTCTGATGAGGATGTTAAGCAAAAACAAACTCAAGCTAAGAAG
Conservation Information
Conserved circRNAs osi_circ_005753*
PMCS 0.259285133
Functional Information
Coding potential Y
Potential coding position 31548703-31548992(+)
Potential amino acid sequence MNLKIVLMRVLRKVVMNLRKRRLRILQLLVLPSLPLRLPRKKSAVMTKVMKMTVLMKALMRMLS
KNKLKLRSPRMNLKIVLMRVLRKVVMNLRKRRLRILQLLVLPSLPLRLPRKKSAVMTKVMKMTV
LMKALMRMLSKNKLKLRSPRMNLKIVLMRVLRKVVMNLRKRRLRILQLLVLPSLPLRLPRKKSA
VMTKVMKMTVLMKALMRMLSKNKLKLRSPRMNLKIVLMRVLRKVVMNLRKRRLRILQLLVLPSL
PLRLPRKKSAVMTKVMKMTVLMKALMRMLSKNKLKLR(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017