Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G14980_circ_g.4 |
ID in PlantcircBase | ath_circ_021848 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 5041800-5042317 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT3G14980 |
Parent gene annotation |
Increased DNA methylation 1 |
Parent gene strand | - |
Alternative splicing | AT3G14980_circ_g.1 AT3G14980_circ_g.2 AT3G14980_circ_g.3 AT3G14980_circ_g.5 |
Support reads | 3 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G14980.2:2 AT3G14980.5:2 AT3G14980.4:2 AT3G14980.3:2 AT3G14980.1:2 AT3G14980.6:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.240883355 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5041878-5042314(+) |
Potential amino acid sequence |
MIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREHLLAIFTTKVGLWKKLSAFTYPLQ TCSMIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREHLLAIFTTKVGLWKKLSAFTY PLQTCSMIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREHLLAIFTTKVGLWKKLSA FTYPLQTCSMIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREH(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Pan et al., 2017 |