Detail information of AT3G14980_circ_g.4


General Information
CircRNA Name AT3G14980_circ_g.4
ID in PlantcircBase ath_circ_021848
Alias NA
Organism Arabidpsis thaliana
Position chr3: 5041800-5042317  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G14980
Parent gene annotation Increased DNA methylation 1
Parent gene strand -
Alternative splicing AT3G14980_circ_g.1 AT3G14980_circ_g.2 AT3G14980_circ_g.3 AT3G14980_circ_g.5
Support reads 3
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G14980.2:2
AT3G14980.5:2
AT3G14980.4:2
AT3G14980.3:2
AT3G14980.1:2
AT3G14980.6:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACATTTAAAGTCCTGAGAGCGTTCAGCATTATCACTAACCAACTCGCTGCATATCCAACATGT
GCAGCTCGAGCAATACCAACTTCCTTCAGGGAGCACcttctcgcaatttttaccacaaaagtag
gtctctggaaaaagctttctgcgtttacttatcccttgcaaacatgttccatgatctgataaca
taaaggta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 201
Transcript exons: 5041800-5041882,5042200-5042317
CTTCTCGCAATTTTTACCACAAAAGTAGGTCTCTGGAAAAAGCTTTCTGCGTTTACTTATCCCT
TGCAAACATGTTCCATGATATTTATGCGCACACTGGGAACATTTAAAGTCCTGAGAGCGTTCAG
CATTATCACTAACCAACTCGCTGCATATCCAACATGTGCAGCTCGAGCAATACCAACTTCCTTC
AGGGAGCAC

Genomic sequence CTTCTCGCAATTTTTACCACAAAAGTAGGTCTCTGGAAAAAGCTTTCTGCGTTTACTTATCCCT
TGCAAACATGTTCCATGATCTGATAACATAAAGGTAACAATCATCAGCCAAAGTGGATTTCATA
CCAAAATAACTAATGTGGGATCCAACTGTCGCGAGAGGCATAACTCCAAAAGTGAGTTTTACAA
AGTGTCAATTACTAAAGAAAGAAAATTGGAGAAGTGCTGAGCCTGGCAGAAAACCACCATCTAC
AACTGTTACTGATGAACAGTGACATCAATCGTGATAAAATCTCAGTGAGACATGATAGAAGAGA
ATTCAAATCAGGGGTTTCCTTTCATGTGATAAAGAAATAAATCATAGTTTCTAAGAGATTGCGA
GCTGTAAGATGATTACATTTATGCGCACACTGGGAACATTTAAAGTCCTGAGAGCGTTCAGCAT
TATCACTAACCAACTCGCTGCATATCCAACATGTGCAGCTCGAGCAATACCAACTTCCTTCAGG
GAGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.240883355
Functional Information
Coding potential Y
Potential coding position 5041878-5042314(+)
Potential amino acid sequence MIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREHLLAIFTTKVGLWKKLSAFTYPLQ
TCSMIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREHLLAIFTTKVGLWKKLSAFTY
PLQTCSMIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREHLLAIFTTKVGLWKKLSA
FTYPLQTCSMIFMRTLGTFKVLRAFSIITNQLAAYPTCAARAIPTSFREH(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017