Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os11g0155500_circ_g.2 |
ID in PlantcircBase | osa_circ_008507 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 2598452-2601315 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0155500 |
Parent gene annotation |
Similar to Amino acid permease family protein, expressed. (Os11t 0155500-01) |
Parent gene strand | + |
Alternative splicing | Os11g0155500_circ_g.1 Os11g0155500_circ_g.3 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0155425-00:3 Os11t0155500-01:3 Os11t0155425-00:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.125079507 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2601132-2598620(+) 2598491-2601312(+) 2598667-2601211(-) |
Potential amino acid sequence |
MGVGVERDRRRRQPRHPDVTHGGDARSGQVPLRHRPLRRHASVARQGAPLHRHPRQRLRLPRGV GGVLDRGEPDHGVCLLQRRRGEELHGVPRHGGGRRRAEQVADCRAGPPQGLQRG*(+) MEYVFSNAAVARSFTAYLGTAVGVDAPSKWRIAVPGLPKGFNEVDLIAVGVILLISVCICYSTK ESSVVNMVLTAVHVAFILFIIVMGFWRGDTRNLTRPVDLAHNPGGFFPHGAAGVFNGAAMVYLS YIGYDAVSTMAEEVERPSRDIPVGVSGSVVLVTLLYCLMAASMSMLLPYDAIDTEAPFSGAFKG SSGWGWVSNVIGAGASLGILTSLMVAMLGQARYLCVIGRSGVMPAWLAKVHPCTATPVNASAFL GELAAFLTGANLIMEYVFSNAAVARSFTAYLGTAVGVDAPSKWRIAVPGLPKGFNEVDLIAVGV ILLISVCICYSTKESSVVNMVLTAVHVAFILFIIVMGFWRGDTRNLTRPVDLAHNPGGFFPHGA AGVFNGAAMVYLSYIGYDAVSTMAEEVERPSRDIPVGVSGSVVLVTLLYCLMAASMSMLLPYDA IDTEAPFSGAFKGSSGWGWVSNVIGAGASLGILTSLMVAMLGQARYLCVIGRSGVMPAWLAKVH PCTATPVNASAFLGELAAFLTGANLIMEYVFSNAAVARSFTAYLGTAVGVDAPSKWRIAVPGLP KGFNEVDLIAVGVILLISVCICYSTKESSVVNMVLTAVHVAFILFIIVMGFWRGDTRNLTRPVD LAHNPGGFFPHGAAGVFNGAAMVYLSYIGYDAVSTMAEEVERPSRDIPVGVSGSVVLVTLLYCL MAASMSMLLPYDAIDTEAPFSGAFKGSSGWGWVSNVIGAGASLGILTSLMVAMLGQARYLCVIG RSGVMPAWLAKVHPCTATPVNASAFLGELAAFLTGANLIMEYVFSNAAVARSFTAYLGTAVGVD APSKWRIAVPGLPKGFNEVDLIAVGVILLISVCICYSTKESSVVNMVLTAVHVAFILFIIVMGF WRGDTRNLTRPVDLAHNPGGFFPHGAAGVFNGAAMVYLSYIGYDAVSTMAEEVERPSRDIPVGV SGSVVLVTLLYCLMAASMSMLLPYDAIDTEAPFSGAFKGSSGWGWVSNVIGAGASLGILTSLMV AMLGQARYLCVIGRSGVMPAWLAKVHPCTATPVNASAFL(+) MQTEMRRMTPTAIRSTSLKPLGRPGTAIRHLLGASTPTAVPRYAVKLLATAALEKTYSMIRFAP VKNAANSPRKAEALTGVAVQGCTLASHAGMTPERPMTQRYLA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |